RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 UQCC2Q9BRT2 126 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 CNTD2Q9H8S5 307 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 SEBOXQ9HB31 216 aaPredicted RBP9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 IL36GQ9NZH8 169 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 IL36RNQ9UBH0 155 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 SLC25A10Q9UBX3 287 aaPredicted RBP9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 MAB21L2Q9Y586 359 aa9.79□□□□□ -0.84
SQSTM1-206ENST00000466342 TET2Q6N021 2002 aaPredicted RBP9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 C22orf46C9J442 243 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 GPR37O15354 613 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 CDRT1O95170 752 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 ECDO95905 644 aaPredicted RBP9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 CALCBP10092 127 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 CALRP27797 417 aaKnown RBP9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 CAV3P56539 151 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 FGF12P61328 243 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 RELBQ01201 579 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 RSU1Q15404 277 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 FGFRL1Q8N441 504 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 ZNRF1Q8ND25 227 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 TMEM185AQ8NFB2 350 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 Q8NFD4 153 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 OR4D6Q8NGJ1 314 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 FOXRED1Q96CU9 486 aaPredicted RBP9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 S100A13Q99584 98 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 METTL9Q9H1A3 318 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 ELL3Q9HB65 397 aaPredicted RBP9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 C1RLQ9NZP8 487 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 GLS2Q9UI32 602 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 STUB1Q9UNE7 303 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 GSTK1Q9Y2Q3 226 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 MRPS28Q9Y2Q9 187 aaKnown RBP9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 RNF114Q9Y508 228 aa9.78□□□□□ -0.84
SQSTM1-206ENST00000466342 HOXA3O43365 443 aaPredicted RBP9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 ZNF780AO75290 641 aaPredicted RBP9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 CLPXO76031 633 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 HTR3BO95264 441 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 HAND1O96004 215 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 CHRM2P08172 466 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 SMIM18P0DKX4 95 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 IGHV4-38-2P0DP08 117 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 JUNBP17275 347 aaPredicted RBP9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 FGF9P31371 208 aaPredicted RBP9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 SNU13P55769 128 aaKnown RBP9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 COL10A1Q03692 680 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 SAMD5Q5TGI4 173 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 GLT8D1Q68CQ7 371 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 BTN2A1Q7KYR7 527 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 OR10K1Q8NGX5 313 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 FAM234AQ9H0X4 552 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 PRDM13Q9H4Q3 707 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 RPUSD1Q9UJJ7 312 aaKnown RBP9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 ING4Q9UNL4 249 aa9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 SOX21Q9Y651 276 aaPredicted RBP9.77□□□□□ -0.85
SQSTM1-206ENST00000466342 TRAV40A0A0B4J280 105 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 SH2D1BO14796 132 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 ZNF737O75373 536 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 CSTBP04080 98 aaKnown RBP9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 TK1P04183 234 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 CD37P11049 281 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 CD36P16671 472 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 NDUFB7P17568 137 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 SERPINA2P20848 420 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 MYL9P24844 172 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 DUSP1P28562 367 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 CAPZA1P52907 286 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 GPR176Q14439 515 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 IL13RA2Q14627 380 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 PDCD1Q15116 288 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 C1orf100Q5SVJ3 147 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 GPR157Q5UAW9 335 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 AWAT2Q6E213 333 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 C22orf42Q6IC83 251 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 GLIPR1L1Q6UWM5 242 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 ASCC1Q8N9N2 400 aaKnown RBP9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 OR51T1Q8NGJ9 327 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 TBC1D15Q8TC07 691 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 H1FXQ92522 213 aaKnown RBP9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 DMRTB1Q96MA1 342 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 GFI1Q99684 422 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 DCTN5Q9BTE1 182 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 EXOSC4Q9NPD3 245 aaKnown RBP9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 PCDHB16Q9NRJ7 776 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 TXNL4BQ9NX01 149 aaKnown RBP9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 GHRLQ9UBU3 117 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 SSR3Q9UNL2 185 aa9.76□□□□□ -0.85
SQSTM1-206ENST00000466342 BIRC6Q9NR09 4857 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 IGHV3OR16-10A0A075B7F0 116 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 TRAV1-2A0A0B4J238 106 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 TMEM82A0PJX8 343 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 K7N7A8 449 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 TOX4O94842 621 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 OR2H2O95918 312 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 GTF2F2P13984 249 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 GADD45AP24522 165 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 LMO1P25800 156 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 C2orf68Q2NKX9 166 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 SLC22A6Q4U2R8 563 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 NHLRC3Q5JS37 347 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 RUSC1-AS1Q66K80 236 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms