RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 LOC102723971A0A1B0GUV8 181 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 LIPT2A6NK58 231 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 NPSP0C0P6 89 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 GNB2P62879 340 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 SLC25A24Q6NUK1 477 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 BTNL3Q6UXE8 466 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 OR13D1Q8NGV5 346 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 Q96M66 194 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 IGKV1-27A0A075B6S5 117 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 CEBPZOSA8MTT3 80 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 WNT5AP41221 380 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 SNAI3Q3KNW1 292 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 RTL6Q6ICC9 239 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 DEFB119Q8N690 84 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 NOXO1Q8NFA2 376 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 UBE2J1Q9Y385 318 aaPredicted RBP10.14□□□□□ -0.79
CPSF3-202ENST00000460593 LTBP2Q14767 1821 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 CHST1O43916 411 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 PITX3O75364 302 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 RPL29P47914 159 aaKnown RBP10.14□□□□□ -0.79
CPSF3-202ENST00000460593 TMEM92Q6UXU6 159 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 MRPL41Q8IXM3 137 aaKnown RBP10.14□□□□□ -0.79
CPSF3-202ENST00000460593 OR10A7Q8NGE5 316 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 PCGF1Q9BSM1 259 aa10.14□□□□□ -0.79
CPSF3-202ENST00000460593 THADAQ6YHU6 1953 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 KIR2DS5A0A0G2JLQ3 304 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 A0A0G2JNG1 304 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 C3orf85A0A1B0GTC6 90 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.13□□□□□ -0.79
CPSF3-202ENST00000460593 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.13□□□□□ -0.79
CPSF3-202ENST00000460593 KIR2DS3K7RE56 304 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 DVL1O14640 695 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 RRP8O43159 456 aaKnown RBP10.13□□□□□ -0.79
CPSF3-202ENST00000460593 HSPA12AO43301 675 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 CYB5R3P00387 301 aaPredicted RBP10.13□□□□□ -0.79
CPSF3-202ENST00000460593 MBP02144 154 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 AKT2P31751 481 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 ELLP55199 621 aaPredicted RBP10.13□□□□□ -0.79
CPSF3-202ENST00000460593 MLF1P58340 268 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 DCAF7P61962 342 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 KIR2DS5Q14953 304 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 C9orf50Q5SZB4 431 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 C16orf82Q7Z2V1 217 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 ZNF695Q8IW36 515 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 TM2D1Q9BX74 207 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 CDH20Q9HBT6 801 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 RPRMQ9NS64 109 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 P4HTMQ9NXG6 502 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 COPS7AQ9UBW8 275 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 FUT9Q9Y231 359 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 VPS13AQ96RL7 3174 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 FRYQ5TBA9 3013 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 IGHV3-15A0A0B4J1V0 119 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 A0A1W2PPQ1 181 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 A0A1W2PQD3 144 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 C3orf80F5H4A9 247 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 HSPB6O14558 160 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 THEGLP0DJG4 465 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 PAX5Q02548 391 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 ZNF726P1Q15940 193 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 CALHM1Q8IU99 346 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 RPUSD4Q96CM3 377 aaKnown RBP10.13□□□□□ -0.79
CPSF3-202ENST00000460593 SYT3Q9BQG1 590 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 C11orf1Q9H5F2 150 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 PLEKHF2Q9H8W4 249 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 DECR2Q9NUI1 292 aa10.13□□□□□ -0.79
CPSF3-202ENST00000460593 FREM2Q5SZK8 3169 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 TNFRSF10CO14798 259 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 SCGB1D1O95968 90 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 IGHG1P01857 330 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 IDH3GP51553 393 aaPredicted RBP10.12□□□□□ -0.79
CPSF3-202ENST00000460593 HERV-K104P61576 105 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 ZP4Q12836 540 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 PHYHD1Q5SRE7 291 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 THEM4Q5T1C6 240 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 ZNF787Q6DD87 383 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 TBC1D26Q86UD7 250 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 RCC1LQ96I51 464 aaKnown RBP10.12□□□□□ -0.79
CPSF3-202ENST00000460593 FBRSQ9HAH7 460 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 LYRM2Q9NU23 88 aaPredicted RBP10.12□□□□□ -0.79
CPSF3-202ENST00000460593 AURKAIP1Q9NWT8 199 aaPredicted RBP10.12□□□□□ -0.79
CPSF3-202ENST00000460593 IGKV3D-11A0A0A0MRZ8 115 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 VSTM2BA6NLU5 285 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 BATFQ16520 125 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 FAM185AQ8N0U4 392 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 TMEM234Q8WY98 164 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 NOL4LQ96MY1 436 aaPredicted RBP10.12□□□□□ -0.79
CPSF3-202ENST00000460593 MOB1AQ9H8S9 216 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 SDF2L1Q9HCN8 221 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 ESPL1Q14674 2120 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 CABIN1Q9Y6J0 2220 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 IGKV1-12A0A0C4DH73 117 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 MPPED1O15442 326 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 TRAF3IP2O43734 574 aaPredicted RBP10.12□□□□□ -0.79
CPSF3-202ENST00000460593 IGKV1D-12P01611 117 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 CCL1P22362 96 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 GNRHRP30968 328 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 RND2P52198 227 aa10.12□□□□□ -0.79
CPSF3-202ENST00000460593 RSPO1Q2MKA7 263 aaPredicted RBP10.12□□□□□ -0.79
CPSF3-202ENST00000460593 SP5Q6BEB4 398 aaPredicted RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms