RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 ZNF44P15621 663 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 SAA4P35542 130 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 TGFBR2P37173 567 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 P2RX3P56373 397 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 RSU1Q15404 277 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 MED22Q15528 200 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 MIDNQ504T8 468 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 C16orf87Q6PH81 154 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 C3orf56Q8N813 242 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 ZNF714Q96N38 554 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 METTL9Q9H1A3 318 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 HEXA-AS1Q9H8Q6 139 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 ISYNA1Q9NPH2 558 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 BLOC1S6Q9UL45 172 aa14.15□□□□□ -0.14
USP39-208ENST00000455732 FUOMA2VDF0 154 aa14.14□□□□□ -0.15
USP39-208ENST00000455732 ZNF780AO75290 641 aaPredicted RBP14.14□□□□□ -0.15
USP39-208ENST00000455732 UNQ9370/PRO34162Q6UXP9 181 aa14.14□□□□□ -0.15
USP39-208ENST00000455732 LYPD6Q86Y78 171 aa14.14□□□□□ -0.15
USP39-208ENST00000455732 NKAIN3Q8N8D7 197 aa14.14□□□□□ -0.15
USP39-208ENST00000455732 ZNRD1Q9P1U0 126 aa14.14□□□□□ -0.15
USP39-208ENST00000455732 FAM96BQ9Y3D0 163 aa14.14□□□□□ -0.15
USP39-208ENST00000455732 A0A1W2PPK0 400 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 MEIOCA2RUB1 952 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 DEGS1O15121 323 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 SC5DO75845 299 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 CDRT1O95170 752 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 PAX5Q02548 391 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 TPBGQ13641 420 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 TBCEQ15813 527 aaPredicted RBP14.13□□□□□ -0.15
USP39-208ENST00000455732 LINC00596Q86U02 117 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 PNKDQ8N490 385 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 TPRX1Q8N7U7 411 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 OR10K1Q8NGX5 313 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 TAF15Q92804 592 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP39-208ENST00000455732 UFD1Q92890 307 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 NKX3-1Q99801 234 aaPredicted RBP14.13□□□□□ -0.15
USP39-208ENST00000455732 PPA2Q9H2U2 334 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 IFT22Q9H7X7 185 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 PCDHB16Q9NRJ7 776 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 UBE2J1Q9Y385 318 aaPredicted RBP14.13□□□□□ -0.15
USP39-208ENST00000455732 PKD1L1Q8TDX9 2849 aa14.13□□□□□ -0.15
USP39-208ENST00000455732 HTR3BO95264 441 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 IGHV1-8P0DP01 117 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 IER3P46695 156 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 MLLT11Q13015 90 aaPredicted RBP14.12□□□□□ -0.15
USP39-208ENST00000455732 PIGYQ3MUY2 71 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 ACSM3Q53FZ2 586 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 OSR2Q8N2R0 312 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 PHYHIPQ92561 330 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 CORO2AQ92828 525 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 COQ2Q96H96 371 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 S100A13Q99584 98 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 TMED9Q9BVK6 235 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 CHIAQ9BZP6 476 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 CCDC90BQ9GZT6 254 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 Q9H521 79 aa14.12□□□□□ -0.15
USP39-208ENST00000455732 RRP15Q9Y3B9 282 aaKnown RBP14.12□□□□□ -0.15
USP39-208ENST00000455732 TRAV24A0A0B4J272 114 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 A0A1W2PRD5 423 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 A0A1W2PRF3 423 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 A0A1W2PRM7 423 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 MEGF11A6BM72 1044 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 FAM181BA6NEQ2 426 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 DENRO43583 198 aaKnown RBP14.11□□□□□ -0.15
USP39-208ENST00000455732 CLPXO76031 633 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 IGHV4-59P01825 116 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 CSTBP04080 98 aaKnown RBP14.11□□□□□ -0.15
USP39-208ENST00000455732 MAS1P04201 325 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 KCNJ3P48549 501 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 RBM11P57052 281 aaKnown RBP14.11□□□□□ -0.15
USP39-208ENST00000455732 GABARAPL2P60520 117 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 RPL15P61313 204 aaKnown RBP14.11□□□□□ -0.15
USP39-208ENST00000455732 SCN1BQ07699 218 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 GPR176Q14439 515 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 LIPKQ5VXJ0 399 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 ZNF782Q6ZMW2 699 aaPredicted RBP14.11□□□□□ -0.15
USP39-208ENST00000455732 JAGN1Q8N5M9 183 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 BEND2Q8NDZ0 799 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 OR11H6Q8NGC7 330 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 OR13D1Q8NGV5 346 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 AJUBAQ96IF1 538 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 NR1H4Q96RI1 486 aaPredicted RBP14.11□□□□□ -0.15
USP39-208ENST00000455732 UQCC2Q9BRT2 126 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 ZNF747Q9BV97 191 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 DPAGT1Q9H3H5 408 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 NCOR1P1Q9H4R4 102 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 TAS2R3Q9NYW6 316 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 ING4Q9UNL4 249 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 ST3GAL6Q9Y274 331 aa14.11□□□□□ -0.15
USP39-208ENST00000455732 TRGV10A0A0A0MS01 117 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 ODAMA1E959 279 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 ODF3BA8MYP8 253 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 MRPS14O60783 128 aaKnown RBP14.1□□□□□ -0.15
USP39-208ENST00000455732 PAHP00439 452 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 GTF2F2P13984 249 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 COX7A1P24310 79 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 PSMA1P25786 263 aaKnown RBP14.1□□□□□ -0.15
USP39-208ENST00000455732 GLIPR1P48060 266 aa14.1□□□□□ -0.15
USP39-208ENST00000455732 GP2P55259 537 aaKnown RBP14.1□□□□□ -0.15
USP39-208ENST00000455732 AESQ08117 197 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms