RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 APOC3P02656 99 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 GLAP06280 429 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 GNG3P63215 75 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 SRPXP78539 464 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 IGSF11Q5DX21 431 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 LDLRAD3Q86YD5 345 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 HS3ST6Q96QI5 342 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 RHOFQ9HBH0 211 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 FBXO9Q9UK97 447 aaPredicted RBP12.9□□□□□ -0.34
LDLR-202ENST00000455727 NSG2Q9Y328 171 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 TMED3Q9Y3Q3 217 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 MED12LQ86YW9 2145 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 KIR2DS1A0A191URI9 304 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 TSPAN4O14817 238 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 ZNHIT1O43257 154 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 JTBO76095 146 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 DIRAS3O95661 229 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 MBPP02686 304 aaPredicted RBP12.9□□□□□ -0.34
LDLR-202ENST00000455727 TK1P04183 234 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 CTXN2P0C2S0 81 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 DUSP1P28562 367 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 KIR2DS4P43632 304 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 KCNJ3P48549 501 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 TNFSF10P50591 281 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 IL24Q13007 206 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 KIR2DS1Q14954 304 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 OR2A2Q6IF42 318 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 LYZL2Q7Z4W2 148 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 FAM219AQ8IW50 185 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 BATF2Q8N1L9 274 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 OR5T2Q8NGG2 359 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 GMPPAQ96IJ6 420 aaPredicted RBP12.9□□□□□ -0.34
LDLR-202ENST00000455727 PKIBQ9C010 78 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 TAF9BQ9HBM6 251 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 OR2S2Q9NQN1 319 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 ZC4H2Q9NQZ6 224 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 GLRX2Q9NS18 164 aa12.9□□□□□ -0.34
LDLR-202ENST00000455727 CDRT15L2A8MXV6 281 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 MPPED1O15442 326 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 GNRHRP30968 328 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 RND3P61587 244 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 IL13RA2Q14627 380 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 RPL7L1Q6DKI1 246 aaKnown RBP12.89□□□□□ -0.35
LDLR-202ENST00000455727 MDP1Q86V88 176 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 OR11L1Q8NGX0 322 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 SMIM8Q96KF7 97 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 MS4A7Q9GZW8 240 aaPredicted RBP12.89□□□□□ -0.35
LDLR-202ENST00000455727 MMP26Q9NRE1 261 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 AMDHD2Q9Y303 409 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 LSM5Q9Y4Y9 91 aaKnown RBP12.89□□□□□ -0.35
LDLR-202ENST00000455727 ATP23Q9Y6H3 246 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 TRBV6-6A0A0A6YYG2 114 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 TRDCB7Z8K6 153 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 SYNGR1O43759 233 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 ATF4P18848 351 aaPredicted RBP12.89□□□□□ -0.35
LDLR-202ENST00000455727 TMEM268Q5VZI3 342 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 HAGHLQ6PII5 290 aaPredicted RBP12.89□□□□□ -0.35
LDLR-202ENST00000455727 IL34Q6ZMJ4 242 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 LHX6Q9UPM6 363 aa12.89□□□□□ -0.35
LDLR-202ENST00000455727 C3orf85A0A1B0GTC6 90 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 TMEM218A2RU14 115 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 TRIM77I1YAP6 450 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 PHF1O43189 567 aaPredicted RBP12.88□□□□□ -0.35
LDLR-202ENST00000455727 TUSC2O75896 110 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 TMEM33P57088 247 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 GPR157Q5UAW9 335 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 IFT22Q9H7X7 185 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 ZNF705EA8MWA4 302 aaPredicted RBP12.88□□□□□ -0.35
LDLR-202ENST00000455727 IGHG3P01860 377 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 PRKACAP17612 351 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 TBC1D28Q2M2D7 210 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 MST1LQ2TV78 715 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 FBXW12Q6X9E4 464 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 SUMF1Q8NBK3 374 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 TP53RKQ96S44 253 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 TMEM222Q9H0R3 208 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 OR51I2Q9H344 312 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 IL36RNQ9UBH0 155 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 FBXL17Q9UF56 701 aa12.88□□□□□ -0.35
LDLR-202ENST00000455727 ESPL1Q14674 2120 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 LILRA1O75019 489 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 SCTP09683 121 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 ZNF14P17017 642 aaPredicted RBP12.87□□□□□ -0.35
LDLR-202ENST00000455727 SULT1A2P50226 295 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 ZNF273Q14593 569 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 SUMF2Q8NBJ7 301 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 UBAC2Q8NBM4 344 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 TMEM56Q96MV1 263 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 TMEM56-RWDD3S4R434 201 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 FAM186AA6NE01 2351 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 ST8SIA3O43173 380 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 SLC34A2O95436 690 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 CDS2O95674 445 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 SCGB1D2O95969 90 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 P2RY1P47900 373 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 TGFBR3Q03167 851 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 PJVKQ0ZLH3 352 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 MRPL49Q13405 166 aaKnown RBP12.87□□□□□ -0.35
LDLR-202ENST00000455727 TMPRSS7Q7RTY8 843 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 FAM58AQ8N1B3 248 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms