RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TRBV9A0A0B4J1U6 114 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 LINC01387J3KSC0 135 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 LPAR6P43657 344 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 SRSF9Q13242 221 aaKnown RBP eCLIP11.8□□□□□ -0.52
USP40-208ENST00000450966 ORAOV1Q8WV07 137 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 MS4A8Q9BY19 250 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 A0A1W2PRS3 328 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 DPRXA6NFQ7 191 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 HLA-DQA1P01909 254 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 HIST1H1DP16402 221 aaKnown RBP11.8□□□□□ -0.52
USP40-208ENST00000450966 RPL27P61353 136 aaKnown RBP11.8□□□□□ -0.52
USP40-208ENST00000450966 BTG2P78543 158 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 LIPHQ8WWY8 451 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 LOXL4Q96JB6 756 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 AQP10Q96PS8 301 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 ZNF355PQ9NSJ1 428 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 A6NNC1 897 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 CA1P00915 261 aaPredicted RBP11.8□□□□□ -0.52
USP40-208ENST00000450966 EWSR1Q01844 656 aaKnown RBP eCLIP11.8□□□□□ -0.52
USP40-208ENST00000450966 OR8I2Q8N0Y5 310 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 RPS4Y2Q8TD47 263 aa11.8□□□□□ -0.52
USP40-208ENST00000450966 ZNF775Q96BV0 537 aaPredicted RBP11.8□□□□□ -0.52
USP40-208ENST00000450966 RIMS4Q9H426 269 aaPredicted RBP11.8□□□□□ -0.52
USP40-208ENST00000450966 TNFSF14O43557 240 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 ANKRD34CP0C6C1 535 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 MMP9P14780 707 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 F2RP25116 425 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 UBE2V1Q13404 147 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 TMEM196Q5HYL7 178 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 MED25Q71SY5 747 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 C10orf126Q8N4M7 172 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 KTI12Q96EK9 354 aaPredicted RBP11.79□□□□□ -0.52
USP40-208ENST00000450966 TMEM147Q9BVK8 224 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 A0A1B0GUL6 1792 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 LDLRAD4O15165 306 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 DUSP8Q13202 625 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 SLC35A4Q96G79 324 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 SMIM14Q96QK8 99 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 NPDC1Q9NQX5 325 aaPredicted RBP11.79□□□□□ -0.52
USP40-208ENST00000450966 NTNG1Q9Y2I2 539 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 ADAM20O43506 726 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 PITX3O75364 302 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 C1QL4Q86Z23 238 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 HSD17B8Q92506 261 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 FGF14Q92915 247 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 FGF22Q9HCT0 170 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 CES1P1Q9UKY3 287 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 H0YL77 283 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 PIAS2O75928 621 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 SELEP16581 610 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 ATP6V0CP27449 155 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 OPRM1P35372 400 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 RHOBP62745 196 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 IL11RAQ14626 422 aa11.79□□□□□ -0.52
USP40-208ENST00000450966 IGLV3-25P01717 112 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 HLA-DRB1P01911 266 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 SCGB1A1P11684 91 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 GALNSP34059 522 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 HERVK_113P61574 105 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 OR8B8Q15620 311 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 SP6Q3SY56 376 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 CLEC2AQ6UVW9 174 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 MSRB3Q8IXL7 192 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 TIMD4Q96H15 378 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 SIGLEC11Q96RL6 698 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 DUSP13Q9UII6 198 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 OR2M5A3KFT3 312 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 PRRT4C9JH25 899 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 MT-CO3P00414 261 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 ACVR1Q04771 509 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 HIKESHIQ53FT3 197 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 TGIF2LYQ8IUE0 185 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 D2HGDHQ8N465 521 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 LINC00615Q96LM1 132 aaPredicted RBP11.78□□□□□ -0.52
USP40-208ENST00000450966 SDHCQ99643 169 aaPredicted RBP11.78□□□□□ -0.52
USP40-208ENST00000450966 EGLN1Q9GZT9 426 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 TRAV39A0A0B4J263 110 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 TBC1D28Q2M2D7 210 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 VASH2Q86V25 355 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 OR8B3Q8NGG8 313 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 OGG1O15527 345 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 NMUP48645 174 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 PFN3P60673 137 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 ROM1Q03395 351 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 OR1C1Q15619 314 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 SSX8Q7RTT4 187 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 MRPL18Q9H0U6 180 aaKnown RBP11.78□□□□□ -0.52
USP40-208ENST00000450966 SPTY2D1-AS1A0A0U1RR47 76 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 CTXND1A0A1B0GTU2 59 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 NXPH2O95156 264 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 IL2RAP01589 272 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 KLK2P20151 261 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 GAGE1Q13065 139 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 MRPL54Q6P161 138 aaKnown RBP11.78□□□□□ -0.52
USP40-208ENST00000450966 GPBAR1Q8TDU6 330 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 NDFIP1Q9BT67 221 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 GPR84Q9NQS5 396 aa11.78□□□□□ -0.52
USP40-208ENST00000450966 C4orf47A7E2U8 309 aa11.77□□□□□ -0.52
USP40-208ENST00000450966 B3GALT4O96024 378 aa11.77□□□□□ -0.52
USP40-208ENST00000450966 CD74P04233 296 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms