RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 C1orf122Q6ZSJ8 110 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 C9orf139Q6ZV77 190 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 USP43Q70EL4 1123 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 TRAPPC6BQ86SZ2 158 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 LRRTM1Q86UE6 522 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 PNKDQ8N490 385 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 NKAIN3Q8N8D7 197 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 OR4D6Q8NGJ1 314 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 OR51T1Q8NGJ9 327 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 SLITRK2Q9H156 845 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 ESM1Q9NQ30 184 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 IL36GQ9NZH8 169 aa15.29■□□□□ 0.04
SHH-203ENST00000435425 hADV38S2A0JD32 116 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 UCHL1P09936 223 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 PRTN3P24158 256 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 PSMA1P25786 263 aaKnown RBP15.28■□□□□ 0.04
SHH-203ENST00000435425 PSMB9P28065 219 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 GUCA2AQ02747 115 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 MEF2CQ06413 473 aaPredicted RBP15.28■□□□□ 0.04
SHH-203ENST00000435425 IL13RA2Q14627 380 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 ATXN7L3Q14CW9 347 aaPredicted RBP15.28■□□□□ 0.04
SHH-203ENST00000435425 SSX1Q16384 188 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 PAN3Q58A45 887 aaKnown RBP15.28■□□□□ 0.04
SHH-203ENST00000435425 ZNF782Q6ZMW2 699 aaPredicted RBP15.28■□□□□ 0.04
SHH-203ENST00000435425 CDH26Q8IXH8 852 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 ZDHHC22Q8N966 263 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 CHST4Q8NCG5 386 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 Q8NFD4 153 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 TNFRSF14Q92956 283 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 PCDHB16Q9NRJ7 776 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 ZNF581Q9P0T4 197 aa15.28■□□□□ 0.04
SHH-203ENST00000435425 A0A0U1RQK1 487 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 hCG_1809904A0A1W2PP81 198 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 A0A1W2PPE2 198 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 A0A1W2PR64 198 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 A0A1W2PRV1 198 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 ZNF780AO75290 641 aaPredicted RBP15.27■□□□□ 0.04
SHH-203ENST00000435425 ZNF728P0DKX0 622 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 COX7A1P24310 79 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 GABRA5P31644 462 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 GLIPR1P48060 266 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 P2RX3P56373 397 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 RBM11P57052 281 aaKnown RBP15.27■□□□□ 0.04
SHH-203ENST00000435425 GPR176Q14439 515 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 KRBOX4Q5JUW0 171 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 GLT8D1Q68CQ7 371 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 NCR3LG1Q68D85 454 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 PIP4P2Q8N4L2 257 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 C11orf42Q8N5U0 333 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 PHYHIPQ92561 330 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 ZNF714Q96N38 554 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 BANF2Q9H503 90 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 TNFRSF19Q9NS68 423 aa15.27■□□□□ 0.04
SHH-203ENST00000435425 TRAV24A0A0B4J272 114 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 FUOMA2VDF0 154 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 DNAJC9-AS1A6NH13 148 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 TRIM77I1YAP6 450 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 GEMIN2O14893 280 aaKnown RBP15.26■□□□□ 0.03
SHH-203ENST00000435425 NPFFO15130 113 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 OR7C1O76099 320 aaPredicted RBP15.26■□□□□ 0.03
SHH-203ENST00000435425 GTF2F2P13984 249 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 DLX6P56179 175 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 ATAD3CQ5T2N8 411 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 UBE2UQ5VVX9 321 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 ZNF773Q6PK81 442 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 TCF23Q7RTU1 214 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 LYPD6Q86Y78 171 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 UQCC2Q9BRT2 126 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 C19orf24Q9BVV8 132 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 FAM96BQ9Y3D0 163 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 AK6Q9Y3D8 172 aaKnown RBP15.26■□□□□ 0.03
SHH-203ENST00000435425 LINC00312Q9Y6C7 94 aa15.26■□□□□ 0.03
SHH-203ENST00000435425 KIAA2026Q5HYC2 2103 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 C17orf98A8MV24 154 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 CRTAPO75718 401 aaPredicted RBP15.25■□□□□ 0.03
SHH-203ENST00000435425 ARL6IP5O75915 188 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 CALRP27797 417 aaKnown RBP15.25■□□□□ 0.03
SHH-203ENST00000435425 ERP29P30040 261 aaKnown RBP15.25■□□□□ 0.03
SHH-203ENST00000435425 UBE2E1P51965 193 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 TAF9Q16594 264 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 TUSC1Q2TAM9 212 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 HCP5Q6MZN7 132 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 BRICD5Q6PL45 260 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.25■□□□□ 0.03
SHH-203ENST00000435425 SUMF2Q8NBJ7 301 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 FAM46BQ96A09 425 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 FOXRED1Q96CU9 486 aaPredicted RBP15.25■□□□□ 0.03
SHH-203ENST00000435425 COQ2Q96H96 371 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 SELENOIQ9C0D9 397 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 HEXA-AS1Q9H8Q6 139 aa15.25■□□□□ 0.03
SHH-203ENST00000435425 UNKLQ9H9P5 680 aaKnown RBP15.25■□□□□ 0.03
SHH-203ENST00000435425 TRGV10A0A0A0MS01 117 aa15.24■□□□□ 0.03
SHH-203ENST00000435425 MEIOCA2RUB1 952 aa15.24■□□□□ 0.03
SHH-203ENST00000435425 CCRL2O00421 344 aa15.24■□□□□ 0.03
SHH-203ENST00000435425 HOXA3O43365 443 aaPredicted RBP15.24■□□□□ 0.03
SHH-203ENST00000435425 UBA52P62987 128 aaKnown RBP15.24■□□□□ 0.03
SHH-203ENST00000435425 NHLRC3Q5JS37 347 aa15.24■□□□□ 0.03
SHH-203ENST00000435425 TMEM104Q8NE00 496 aa15.24■□□□□ 0.03
SHH-203ENST00000435425 NEK7Q8TDX7 302 aa15.24■□□□□ 0.03
SHH-203ENST00000435425 FCGR1BQ92637 280 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms