RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 F12P00748 615 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-207ENST00000433762 MT-ND4LP03901 98 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 TK1P04183 234 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 RAB1AP62820 205 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 BAXQ07812 192 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 Q0VFX4 171 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 MKXQ8IYA7 352 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 SLC35G3Q8N808 338 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 SMIM3Q9BZL3 60 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF581Q9P0T4 197 aa11.77□□□□□ -0.53
COL6A3-207ENST00000433762 C9JQL5 133 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 K7N7A8 449 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 ACP1P24666 158 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 Q6ZPA2 131 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 SLC25A26Q70HW3 274 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 OR2C3Q8N628 320 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 OR52M1Q8NGK5 317 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 FGFBP3Q8TAT2 258 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 EXTL1Q92935 676 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 WNT2BQ93097 391 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 APOBEC3DQ96AK3 386 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-207ENST00000433762 TP53RKQ96S44 253 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 PLEKHF2Q9H8W4 249 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 COA4Q9NYJ1 87 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 RTTNQ86VV8 2226 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 OR7C1O76099 320 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-207ENST00000433762 RFPL3SP0C7P2 107 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 SLC25A6P12236 298 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 NFYBP25208 207 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 UCP1P25874 307 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 GDF1P27539 372 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 GNRHRP30968 328 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 EWSR1Q01844 656 aaKnown RBP eCLIP11.76□□□□□ -0.53
COL6A3-207ENST00000433762 OR8G1Q15617 311 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 CEACAM21Q3KPI0 293 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 WIPI1Q5MNZ9 446 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-207ENST00000433762 SLC23A3Q6PIS1 610 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 CALHM1Q8IU99 346 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 SECTM1Q8WVN6 248 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 AKR1E2Q96JD6 320 aa11.76□□□□□ -0.53
COL6A3-207ENST00000433762 LYRM2Q9NU23 88 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-207ENST00000433762 NOSIPQ9Y314 301 aaKnown RBP11.76□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF724A8MTY0 619 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 MRPL33O75394 65 aaKnown RBP11.75□□□□□ -0.53
COL6A3-207ENST00000433762 PTAFRP25105 342 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 MAS1LP35410 378 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 NKX2-1P43699 371 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-207ENST00000433762 C6orf15Q6UXA7 325 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-207ENST00000433762 DPPA3Q6W0C5 159 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 MALSU1Q96EH3 234 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 FAM173AQ9BQD7 235 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 SLC35B3Q9H1N7 401 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 UNKLQ9H9P5 680 aaKnown RBP11.75□□□□□ -0.53
COL6A3-207ENST00000433762 DEPPQ9NTK1 212 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 B4GALT7Q9UBV7 327 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 TECTAO75443 2155 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 SHANK1Q9Y566 2161 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 LRP5LA4QPB2 252 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 HSPA12AO43301 675 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 CEACAM1P13688 526 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 VDAC1P21796 283 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 TSC22D1Q15714 1073 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 RSPO4Q2I0M5 234 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-207ENST00000433762 ZDHHC23Q8IYP9 409 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF565Q8N9K5 539 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 CPEB3Q8NE35 698 aaKnown RBP11.75□□□□□ -0.53
COL6A3-207ENST00000433762 OR5A2Q8NGI9 324 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 OR1J1Q8NGS3 322 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 OR11L1Q8NGX0 322 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 DYRK2Q92630 601 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 GNPNAT1Q96EK6 184 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-207ENST00000433762 PAPOLGQ9BWT3 736 aaKnown RBP11.75□□□□□ -0.53
COL6A3-207ENST00000433762 IFT22Q9H7X7 185 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 ATP23Q9Y6H3 246 aa11.75□□□□□ -0.53
COL6A3-207ENST00000433762 C1orf196B1AJZ1 125 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF732B4DXR9 585 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF587BE7ETH6 402 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 AGPAT2O15120 278 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 TRAPPC6AO75865 159 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 PATE4P0C8F1 98 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 ARR3P36575 388 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 PPT1P50897 306 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF616Q08AN1 781 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 PRDX4Q13162 271 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 RNPS1Q15287 305 aaKnown RBP11.74□□□□□ -0.53
COL6A3-207ENST00000433762 NMSQ5H8A3 153 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 TSPO2Q5TGU0 170 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF695Q8IW36 515 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 SELENOHQ8IZQ5 122 aaKnown RBP11.74□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF561Q8N587 486 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 OR5D13Q8NGL4 314 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 BSCL2Q96G97 398 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-207ENST00000433762 USB1Q9BQ65 265 aaKnown RBP11.74□□□□□ -0.53
COL6A3-207ENST00000433762 DDA1Q9BW61 102 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 UBE2J1Q9Y385 318 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-207ENST00000433762 H0Y980 276 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 M0R296 226 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 ZNF883P0CG24 379 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 S100GP29377 79 aa11.74□□□□□ -0.53
COL6A3-207ENST00000433762 OTX2P32243 289 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms