RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 NANOS3P60323 173 aaKnown RBP11.59□□□□□ -0.55
SDC1-204ENST00000429035 ISL1P61371 349 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 BDH1Q02338 343 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 TMED1Q13445 227 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 LTC4SQ16873 150 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 HLA-DRB5Q30154 266 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 TPTE2P1Q5T6R2 138 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 HEPN1Q6WQI6 88 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 RNF144BQ7Z419 303 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 C4orf36Q96KX1 117 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 ZNF649Q9BS31 505 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 TAS2R3Q9NYW6 316 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 FRRS1LQ9P0K9 344 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.59□□□□□ -0.55
SDC1-204ENST00000429035 HHLA2Q9UM44 414 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 ORC6Q9Y5N6 252 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 SLC16A6O15403 523 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 CIB2O75838 187 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 KDM4BO94953 1096 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 IGHV3-7P01780 117 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 MNDAP41218 407 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 TOMM40LQ969M1 308 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 RPEQ96AT9 228 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 COQ2Q96H96 371 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 RBM14Q96PK6 669 aaKnown RBP11.58□□□□□ -0.56
SDC1-204ENST00000429035 NR1H4Q96RI1 486 aaPredicted RBP11.58□□□□□ -0.56
SDC1-204ENST00000429035 MBOAT4Q96T53 435 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 COMMD4Q9H0A8 199 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 PPIL3Q9H2H8 161 aaKnown RBP11.58□□□□□ -0.56
SDC1-204ENST00000429035 SEBOXQ9HB31 216 aaPredicted RBP11.58□□□□□ -0.56
SDC1-204ENST00000429035 ZNF281Q9Y2X9 895 aa11.58□□□□□ -0.56
SDC1-204ENST00000429035 SLC33A1O00400 549 aaPredicted RBP11.57□□□□□ -0.56
SDC1-204ENST00000429035 DEGS1O15121 323 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 TMEM225BP0DP42 221 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 GNG10P50151 68 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 PRRX1P54821 245 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 HES1Q14469 280 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 ZSCAN26Q16670 478 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 ZIK1Q3SY52 487 aaPredicted RBP11.57□□□□□ -0.56
SDC1-204ENST00000429035 TCTEX1D4Q5JR98 221 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 CCDC144NLQ6NUI1 221 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 TSEN15Q8WW01 171 aaKnown RBP11.57□□□□□ -0.56
SDC1-204ENST00000429035 RNF166Q96A37 237 aaPredicted RBP11.57□□□□□ -0.56
SDC1-204ENST00000429035 CREB3L1Q96BA8 519 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 CENPNQ96H22 339 aaPredicted RBP11.57□□□□□ -0.56
SDC1-204ENST00000429035 OSBPL10Q9BXB5 764 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 FAM192AQ9GZU8 254 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 MOB4Q9Y3A3 225 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 HSPE1-MOB4S4R3N1 261 aa11.57□□□□□ -0.56
SDC1-204ENST00000429035 ZNF729A6NN14 1252 aaPredicted RBP11.56□□□□□ -0.56
SDC1-204ENST00000429035 H0YJX3 145 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 BUB1B-PAK6H3BSN5 160 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 K7EIL1 84 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 IGLV1-47P01700 117 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 ISG15P05161 165 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 HOXD3P31249 432 aaPredicted RBP11.56□□□□□ -0.56
SDC1-204ENST00000429035 RASSF2P50749 326 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 ALKBH1Q13686 389 aaKnown RBP11.56□□□□□ -0.56
SDC1-204ENST00000429035 PAN3Q58A45 887 aaKnown RBP11.56□□□□□ -0.56
SDC1-204ENST00000429035 DEFB121Q5J5C9 76 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 CHST4Q8NCG5 386 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 DPF1Q92782 380 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 LEAP2Q969E1 77 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 PELI1Q96FA3 418 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 MRPL48Q96GC5 212 aaKnown RBP11.56□□□□□ -0.56
SDC1-204ENST00000429035 RCC1LQ96I51 464 aaKnown RBP11.56□□□□□ -0.56
SDC1-204ENST00000429035 HRASLS5Q96KN8 279 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 ALG8Q9BVK2 526 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 ZCCHC4Q9H5U6 513 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 OR6C3Q9NZP0 311 aa11.56□□□□□ -0.56
SDC1-204ENST00000429035 AMMECR1Q9Y4X0 333 aaPredicted RBP11.56□□□□□ -0.56
SDC1-204ENST00000429035 MEIKINA0A087WXM9 373 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 PSMB11A5LHX3 300 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 NUDT19A8MXV4 375 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 EI24O14681 340 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 SNRNP70P08621 437 aaKnown RBP11.55□□□□□ -0.56
SDC1-204ENST00000429035 CD34P28906 385 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 C17orf58Q2M2W7 97 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 UTF1Q5T230 341 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 Q6P435 159 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 KCTD20Q7Z5Y7 419 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 OSR2Q8N2R0 312 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 ACBD7Q8N6N7 88 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 OR56B4Q8NH76 319 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 OR9G1Q8NH87 305 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 PYDC1Q8WXC3 89 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 CORO2AQ92828 525 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 GPER1Q99527 375 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 CALYQ9NYX4 217 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 AASSQ9UDR5 926 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 KIF25Q9UIL4 384 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 MYRFQ9Y2G1 1151 aa11.55□□□□□ -0.56
SDC1-204ENST00000429035 SNTNA6NMZ2 147 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 OR4C45A6NMZ5 311 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 M0QZK8 103 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 SULT1B1O43704 296 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 MT-ND2P03891 347 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 AMY1AP04745 511 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 AMY2AP04746 511 aa11.54□□□□□ -0.56
SDC1-204ENST00000429035 CSN2P05814 226 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms