RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 KAAG1Q9UBP8 84 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 METRNQ9UJH8 293 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 MGAT4AQ9UM21 535 aa8.45□□□□□ -1.06
CD44-207ENST00000425428 ABCA12Q86UK0 2595 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 IGKV1D-17A0A075B6S4 117 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 hCG_1809904A0A1W2PP81 198 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 A0A1W2PPE2 198 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 A0A1W2PR64 198 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 A0A1W2PRV1 198 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 CEACAM18A8MTB9 384 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 K7N7A8 449 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 ECDO95905 644 aaPredicted RBP8.44□□□□□ -1.06
CD44-207ENST00000425428 TK1P04183 234 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 EIF4EP06730 217 aaKnown RBP8.44□□□□□ -1.06
CD44-207ENST00000425428 USF1P22415 310 aaPredicted RBP8.44□□□□□ -1.06
CD44-207ENST00000425428 LMO1P25800 156 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 PTBP1P26599 531 aaKnown RBP eCLIP8.44□□□□□ -1.063e-6■■■■■ 30.2
CD44-207ENST00000425428 CBX5P45973 191 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 EFNB2P52799 333 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 EDDM3BP56851 147 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 ZNF45Q02386 682 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 CDNFQ49AH0 187 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 KRBOX4Q5JUW0 171 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 PYHIN1Q6K0P9 492 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 CNIH2Q6PI25 160 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 OR8H2Q8N162 312 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 ZNF565Q8N9K5 539 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 H1FXQ92522 213 aaKnown RBP8.44□□□□□ -1.06
CD44-207ENST00000425428 WDFY2Q96P53 400 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 CMSS1Q9BQ75 279 aaKnown RBP8.44□□□□□ -1.06
CD44-207ENST00000425428 NICN1Q9BSH3 213 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 SSBP3Q9BWW4 388 aaPredicted RBP8.44□□□□□ -1.06
CD44-207ENST00000425428 PPA2Q9H2U2 334 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 PATZ1Q9HBE1 687 aaKnown RBP8.44□□□□□ -1.06
CD44-207ENST00000425428 KCNIP1Q9NZI2 227 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 ITGB1BP2Q9UKP3 347 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 CELSR2Q9HCU4 2923 aa8.44□□□□□ -1.06
CD44-207ENST00000425428 TMEM30CPA0ZSE6 113 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 UBE2QL1A1L167 161 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 POM121CA8CG34 1229 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.43□□□□□ -1.06
CD44-207ENST00000425428 SLC33A1O00400 549 aaPredicted RBP8.43□□□□□ -1.06
CD44-207ENST00000425428 SOCS1O15524 211 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 FOXH1O75593 365 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 HIST1H1DP16402 221 aaKnown RBP8.43□□□□□ -1.06
CD44-207ENST00000425428 CHATP28329 748 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 TNFSF8P32971 234 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 PRSS3P35030 304 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 CEBPDP49716 269 aaPredicted RBP8.43□□□□□ -1.06
CD44-207ENST00000425428 TAS2R20P59543 309 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 EDDM3AQ14507 147 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 PDCD1Q15116 288 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 PYDC2Q56P42 97 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 Q6P435 159 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 TRAT1Q6PIZ9 186 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 TRAPPC6BQ86SZ2 158 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 CD177Q8N6Q3 437 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 ZNRF1Q8ND25 227 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 OR6Q1Q8NGQ2 317 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 SETD6Q8TBK2 473 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 FCAMRQ8WWV6 532 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 SLC25A38Q96DW6 304 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 SEH1LQ96EE3 360 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 ARHGAP5-AS1Q96IT6 56 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 GAFA1Q96PS6 74 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 PECRQ9BY49 303 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 WDR12Q9GZL7 423 aaKnown RBP8.43□□□□□ -1.06
CD44-207ENST00000425428 IFT46Q9NQC8 304 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 OR6C3Q9NZP0 311 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 IL36RNQ9UBH0 155 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 TRAPPC2LQ9UL33 140 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 NAV2Q8IVL1 2488 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 HECTD1Q9ULT8 2610 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 TRGV10A0A0A0MS01 117 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 A0A1W2PQ09 198 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 hADV38S2A0JD32 116 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 RAB27BO00194 218 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 DVL1O14640 695 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 CSN2P05814 226 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 GNB3P16520 340 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 ATXN7L3Q14CW9 347 aaPredicted RBP8.43□□□□□ -1.06
CD44-207ENST00000425428 C6orf183Q5T699 404 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 MOB1BQ7L9L4 216 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 C6orf201Q7Z4U5 140 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 SNX29P2Q8IUI4 249 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 BPIFB2Q8N4F0 458 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 OR4M1Q8NGD0 313 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 TSC22D3Q99576 134 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 FAAP24Q9BTP7 215 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 CHST6Q9GZX3 395 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 C12orf4Q9NQ89 552 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 ING3Q9NXR8 418 aa8.43□□□□□ -1.06
CD44-207ENST00000425428 RCC2Q9P258 522 aaKnown RBP8.43□□□□□ -1.06
CD44-207ENST00000425428 MEIKINA0A087WXM9 373 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 TRBV23-1A0A0A0MS06 115 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 TRAV24A0A0B4J272 114 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 SULT1C2O00338 296 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 WNT2P09544 360 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 ERP29P30040 261 aaKnown RBP8.42□□□□□ -1.06
CD44-207ENST00000425428 ACTBP60709 375 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms