RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ARFGEF1Q9Y6D6 1849 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 GPNMBQ14956 572 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 FAM53AQ6NSI3 398 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 FGF11Q92914 225 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 GPX7Q96SL4 187 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 OR2J1Q9GZK6 312 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 MMP26Q9NRE1 261 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM218A2RU14 115 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 M0R2Z0 102 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 COL8A1P27658 744 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 SNRPNP63162 240 aaKnown RBP6.09□□□□□ -1.43
SCN1A-204ENST00000423058 MRPS11P82912 194 aaKnown RBP6.09□□□□□ -1.43
SCN1A-204ENST00000423058 HYAL1Q12794 435 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 ELOBQ15370 118 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM99Q8N816 258 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 OR4P4Q8NGL7 312 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF519Q8TB69 540 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 SMIM14Q96QK8 99 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 PCGF1Q9BSM1 259 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 DLEC1Q9Y238 1755 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 SLC17A2O00624 439 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 BCL2L11O43521 198 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 AVPR2P30518 371 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 MRGPREQ86SM8 312 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 BAP18Q8IXM2 172 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 ZIC5Q96T25 663 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 ELOVL1Q9BW60 279 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 ZC3H12DA2A288 527 aaKnown RBP6.09□□□□□ -1.43
SCN1A-204ENST00000423058 CXCL10P02778 98 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 FZD5Q13467 585 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 INO80CQ6PI98 192 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-204ENST00000423058 WFDC3Q8IUB2 231 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 DCTN5Q9BTE1 182 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 NXF2Q9GZY0 626 aaKnown RBP6.09□□□□□ -1.43
SCN1A-204ENST00000423058 SCN7AQ01118 1682 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 S1PR2O95136 353 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 MBPP02686 304 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF32P17041 273 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 IL13RA2Q14627 380 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 C10orf113Q5VZT2 155 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 MRGPRDQ8TDS7 321 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 CRYGNQ8WXF5 182 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 STARD4Q96DR4 205 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 GMPPAQ96IJ6 420 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-204ENST00000423058 NTMQ9P121 344 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 CST7O76096 145 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 HERPUD1Q15011 391 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF774Q6NX45 483 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 WFDC5Q8TCV5 224 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 RAX2Q96IS3 184 aa6.09□□□□□ -1.43
SCN1A-204ENST00000423058 SF3B5Q9BWJ5 86 aaKnown RBP6.09□□□□□ -1.43
SCN1A-204ENST00000423058 GTF3C1Q12789 2109 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 A6NDN8 102 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 H3BP45 60 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 CD3DP04234 171 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 PRR35P0CG20 571 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 RPS19P39019 145 aaKnown RBP6.09□□□□□ -1.44
SCN1A-204ENST00000423058 CD96P40200 585 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 ACAA2P42765 397 aaKnown RBP6.09□□□□□ -1.44
SCN1A-204ENST00000423058 SCAND1P57086 179 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 LIAT1Q6ZQX7 453 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 D2HGDHQ8N465 521 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 OR1L8Q8NGR8 309 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 NUBPLQ8TB37 319 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 DPH3P1Q9H4G8 78 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 IL20Q9NYY1 176 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 SLC25A10Q9UBX3 287 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-204ENST00000423058 SCN5AQ14524 2016 aa6.09□□□□□ -1.44
SCN1A-204ENST00000423058 PDCD6O75340 191 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 ZFP36L2P47974 494 aaKnown RBP6.08□□□□□ -1.44
SCN1A-204ENST00000423058 SLC6A12P48065 614 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 TWIST1Q15672 202 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 FAM74A3Q4VXF1 159 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 TEX261Q6UWH6 196 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR6X1Q8NH79 312 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 P2RX4Q99571 388 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 NEURL2Q9BR09 285 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 CACNG5Q9UF02 275 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 SMPD2O60906 423 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 PNLIPP16233 465 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 LIMK1P53667 647 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 C1orf185Q5T7R7 199 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR52M1Q8NGK5 317 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 OR4A5Q8NH83 315 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 MAP6Q96JE9 813 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 HARBI1Q96MB7 349 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM204Q9BSN7 226 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 SLC52A3Q9NQ40 469 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM38BQ9NVV0 291 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 KCNE1BA0A087WTH5 132 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 A0A1W2PR80 420 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 CORTO00230 105 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 PDE6DO43924 150 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 IGLV3-27P01718 113 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 TSPOP30536 169 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 GPR6P46095 362 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-204ENST00000423058 TNFSF10P50591 281 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 RAG2P55895 527 aa6.08□□□□□ -1.44
SCN1A-204ENST00000423058 NUTF2P61970 127 aaKnown RBP6.08□□□□□ -1.44
SCN1A-204ENST00000423058 GGTLC2Q14390 218 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms