RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 ZNF418Q8TF45 676 aaPredicted RBP16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 MRPS24Q96EL2 167 aaKnown RBP16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 C1orf147Q96MC9 270 aaPredicted RBP16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 SLC6A7Q99884 636 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 SIRT7Q9NRC8 400 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 GHRLQ9UBU3 117 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 TRAV24A0A0B4J272 114 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 TRDV1A0A1B0GX56 115 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 TCF21O43680 179 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 CSN2P05814 226 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 P2RX3P56373 397 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 ZNF273Q14593 569 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 SYT6Q5T7P8 510 aaPredicted RBP16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 LINC00596Q86U02 117 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 BCL6BQ8N143 479 aaPredicted RBP16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 TNFRSF14Q92956 283 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 LHX4Q969G2 390 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 SUCNR1Q9BXA5 334 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 PPA2Q9H2U2 334 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 IFT22Q9H7X7 185 aa16.29■□□□□ 0.2
PDLIM2-207ENST00000409417 A0A0A6YYJ9 748 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 IGHV1-69DA0A0B4J2H0 117 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 A0A1W2PP11 408 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 hCG_1809904A0A1W2PP81 198 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 A0A1W2PPE2 198 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 A0A1W2PR64 198 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 A0A1W2PRV1 198 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 hADV38S2A0JD32 116 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 FUOMA2VDF0 154 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 IGHV1-69P01742 117 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 NCR3LG1Q68D85 454 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 BRD3OSQ6XYD6 125 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 C11orf42Q8N5U0 333 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 LINC00312Q9Y6C7 94 aa16.28■□□□□ 0.2
PDLIM2-207ENST00000409417 FBN1P35555 2871 aaKnown RBP16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 GEMIN2O14893 280 aaKnown RBP16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 OR7C1O76099 320 aaPredicted RBP16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 UBBP0CG47 229 aa16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 ZNF728P0DKX0 622 aa16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 CCL3L1P16619 93 aa16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 DLX6P56179 175 aa16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 GUCA2AQ02747 115 aa16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 PAN3Q58A45 887 aaKnown RBP16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 TPRX1Q8N7U7 411 aa16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 TSPAN14Q8NG11 270 aa16.27■□□□□ 0.19
PDLIM2-207ENST00000409417 A0A087WXM4 84 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 TRAV1-2A0A0B4J238 106 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 RNASEK-C17orf49H0YIS7 233 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 SLC22A1O15245 554 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 HTR2CP28335 458 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 AESQ08117 197 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 NEDD8Q15843 81 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 MPV17LQ2QL34 196 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 TCF23Q7RTU1 214 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 PDZD9Q8IXQ8 264 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 TMEM104Q8NE00 496 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 OR6M1Q8NGM8 313 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 GFI1Q99684 422 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 ZNF696Q9H7X3 374 aa16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 AK6Q9Y3D8 172 aaKnown RBP16.26■□□□□ 0.19
PDLIM2-207ENST00000409417 C17orf98A8MV24 154 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 CRTAPO75718 401 aaPredicted RBP16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 RBP4P02753 201 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 MGMTP16455 207 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 KCNJ3P48549 501 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 PSMD7P51665 324 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 DLX1P56177 255 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 HILS1P60008 231 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 PRB3Q04118 309 aaPredicted RBP16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 TAF9Q16594 264 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 RUSC1-AS1Q66K80 236 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 RBMS3Q6XE24 437 aaKnown RBP16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 ZNF714Q96N38 554 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 CST11Q9H112 138 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 BANF2Q9H503 90 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 ZNF581Q9P0T4 197 aa16.25■□□□□ 0.19
PDLIM2-207ENST00000409417 ODAMA1E959 279 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 MEX3AA1L020 520 aaKnown RBP16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 HSPB6O14558 160 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 FGF9P31371 208 aaPredicted RBP16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 GLIPR1P48060 266 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 UBE2E1P51965 193 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 PAX5Q02548 391 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 ATXN7L3Q14CW9 347 aaPredicted RBP16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 KRBOX4Q5JUW0 171 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 SIGLECL1Q8N7X8 197 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 SUMF2Q8NBJ7 301 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 COQ2Q96H96 371 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 JMJD8Q96S16 334 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 DPCDQ9BVM2 203 aaPredicted RBP16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 BARHL1Q9BZE3 327 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 SELENOIQ9C0D9 397 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 HEXA-AS1Q9H8Q6 139 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 SPACA1Q9HBV2 294 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 STUB1Q9UNE7 303 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 UBE2J1Q9Y385 318 aaPredicted RBP16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 SOX21Q9Y651 276 aaPredicted RBP16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 DSCAML1Q8TD84 2053 aa16.24■□□□□ 0.19
PDLIM2-207ENST00000409417 TRGV10A0A0A0MS01 117 aa16.23■□□□□ 0.19
PDLIM2-207ENST00000409417 FAM90A10PA6NDY2 464 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms