RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SGPP2Q8IWX5 399 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 C1orf147Q96MC9 270 aaPredicted RBP9.69□□□□□ -0.86
CUX1-204ENST00000393824 ZNF700Q9H0M5 742 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 SH3BGRL3Q9H299 93 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 TMEM242Q9NWH2 141 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 P4HTMQ9NXG6 502 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 KIAA1456Q9P272 454 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 C14orf166Q9Y224 244 aaKnown RBP9.69□□□□□ -0.86
CUX1-204ENST00000393824 MED12Q93074 2177 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 CACNA1AO00555 2505 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 PIEZO2Q9H5I5 2752 aa9.69□□□□□ -0.86
CUX1-204ENST00000393824 A0A087WZY1 265 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 C11orf98E9PRG8 122 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 MBPP02686 304 aaPredicted RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 GP1BBP13224 206 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 ZNF823P16415 610 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 ZNF93P35789 620 aaPredicted RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 ECI1P42126 302 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 FBXW4P57775 412 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 RND3P61587 244 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 DCAF7P61962 342 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 HAGHQ16775 308 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 MAJINQ3KP22 176 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 SPSB3Q6PJ21 355 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 OR5D14Q8NGL3 314 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 OR14K1Q8NGZ2 314 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 KCNG3Q8TAE7 436 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 FAM213BQ8TBF2 198 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 ADAT3Q96EY9 351 aaPredicted RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 FAM210BQ96KR6 192 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.68□□□□□ -0.863e-6■■□□□ 13.5
CUX1-204ENST00000393824 MYOTQ9UBF9 498 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 FOXD3Q9UJU5 478 aaPredicted RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 GAB2Q9UQC2 676 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 C2orf72A6NCS6 295 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 H0YL77 283 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 SDCBPO00560 298 aaPredicted RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 PLPP3O14495 311 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 EREGO14944 169 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 TSPAN2O60636 221 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 KNG1P01042 644 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 HSPB1P04792 205 aaKnown RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 RAC2P15153 192 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 RND2P52198 227 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 POLR2HP52434 150 aaKnown RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 CCL20P78556 96 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 FOXK1P85037 733 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 SLC10A1Q14973 349 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 ZNF468Q5VIY5 522 aaPredicted RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 ABLIM2Q6H8Q1 611 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 TMEM183AQ8IXX5 376 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 SLC26A10Q8NG04 563 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 MRPL24Q96A35 216 aaKnown RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 ZNF385AQ96PM9 386 aaKnown RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 SCNM1Q9BWG6 230 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 C19orf25Q9UFG5 118 aaPredicted RBP9.68□□□□□ -0.86
CUX1-204ENST00000393824 PCNX3Q9H6A9 2034 aa9.68□□□□□ -0.86
CUX1-204ENST00000393824 NSG1A0A0A6YYJ2 146 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 NPIPB13A6NJU9 1138 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 NPIPB4C9JG80 1138 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 CDC14BO60729 498 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 QDPRP09417 244 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 CD200P41217 278 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 MRPS11P82912 194 aaKnown RBP9.67□□□□□ -0.86
CUX1-204ENST00000393824 PLCXD2Q0VAA5 305 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 ZP4Q12836 540 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 PLXDC2Q6UX71 529 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 HSD17B11Q8NBQ5 300 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 NIPSNAP3BQ9BS92 247 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 TMEM208Q9BTX3 173 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 DECR2Q9NUI1 292 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 EHFQ9NZC4 300 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 COA3Q9Y2R0 106 aaPredicted RBP9.67□□□□□ -0.86
CUX1-204ENST00000393824 CRYM-AS1A6NIL9 109 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 C21orf140B9A014 251 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 ALG1L2C9J202 215 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 NKX2-8O15522 239 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 HCRTR2O43614 444 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 CYTIPO60759 359 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 MPIG6BO95866 241 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 IL18BPO95998 194 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 GCGP01275 180 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 TTRP02766 147 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 CTSDP07339 412 aaPredicted RBP9.67□□□□□ -0.86
CUX1-204ENST00000393824 SNU13P55769 128 aaKnown RBP9.67□□□□□ -0.86
CUX1-204ENST00000393824 ARFRP1Q13795 201 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 HLA-DQA1Q5Y7H0 255 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 GLIPR1L1Q6UWM5 242 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 TMEM182Q6ZP80 229 aaPredicted RBP9.67□□□□□ -0.86
CUX1-204ENST00000393824 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.67□□□□□ -0.86
CUX1-204ENST00000393824 C1orf87Q8N0U7 546 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 ZNF248Q8NDW4 579 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 RNF133Q8WVZ7 376 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 PSMF1Q92530 271 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 ARHGAP5-AS1Q96IT6 56 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 HIPK2Q9H2X6 1198 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 OR14J1Q9UGF5 321 aa9.67□□□□□ -0.86
CUX1-204ENST00000393824 MAP1BP46821 2468 aaKnown RBP9.67□□□□□ -0.86
CUX1-204ENST00000393824 TRBV24-1A0A075B6N3 115 aa9.66□□□□□ -0.86
CUX1-204ENST00000393824 TMED7-TICAM2A0A0A6YYA0 188 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms