RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CENPEQ02224 2701 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 ZNF816-ZNF321PA0A0X1KG74 233 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 ANGPTL7O43827 346 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 NGFP01138 241 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 CD8AP01732 235 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 SOD3P08294 240 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 AMY2BP19961 511 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 KITLGP21583 273 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 GABRR1P24046 479 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 CD34P28906 385 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 KRTAP10-9P60411 292 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 MST1LQ2TV78 715 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 FAHD2BQ6P2I3 314 aaPredicted RBP8.66□□□□□ -1.02
VPS53-202ENST00000389040 VHLLQ6RSH7 139 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 HOGA1Q86XE5 327 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 NEUROG1Q92886 237 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 FAHD2AQ96GK7 314 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 GSX2Q9BZM3 304 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 OR2J1Q9GZK6 312 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 BARX1Q9HBU1 254 aaPredicted RBP8.66□□□□□ -1.02
VPS53-202ENST00000389040 STARD10Q9Y365 291 aa8.66□□□□□ -1.02
VPS53-202ENST00000389040 FBN2P35556 2912 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 SPRY1O43609 319 aaPredicted RBP8.65□□□□□ -1.02
VPS53-202ENST00000389040 CA11O75493 328 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 HTR3BO95264 441 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 PLATP00750 562 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 CSTBP04080 98 aaKnown RBP8.65□□□□□ -1.02
VPS53-202ENST00000389040 C4BPBP20851 252 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 NFYAP23511 347 aaPredicted RBP8.65□□□□□ -1.02
VPS53-202ENST00000389040 ZBTB25P24278 435 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 FUT6P51993 359 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 TAS2R46P59540 309 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 PPP1R1AQ13522 171 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 GRK1Q15835 563 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 PLCXD3Q63HM9 321 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 PRSS57Q6UWY2 283 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 ASCL4Q6XD76 172 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 RFPL4BQ6ZWI9 263 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 LYG2Q86SG7 212 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 ZNF680Q8NEM1 530 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 OR5H2Q8NGV7 314 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 TERB2Q8NHR7 220 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 SLC25A40Q8TBP6 338 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 ELMOD3Q96FG2 381 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 MRPL37Q9BZE1 423 aaKnown RBP8.65□□□□□ -1.02
VPS53-202ENST00000389040 RAB1BQ9H0U4 201 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 FN3KRPQ9HA64 309 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 DUSP13Q9UII6 198 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 ZDHHC8Q9ULC8 765 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 SLC7A11Q9UPY5 501 aa8.65□□□□□ -1.02
VPS53-202ENST00000389040 HMSDA8MTL9 139 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 M0R233 179 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 MPC2O95563 127 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 ADH4P08319 380 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 CXCL2P19875 107 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 ATP1B3P54709 279 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 SNU13P55769 128 aaKnown RBP8.64□□□□□ -1.03
VPS53-202ENST00000389040 TAS2R31P59538 309 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 SEC61A1P61619 476 aaKnown RBP8.64□□□□□ -1.03
VPS53-202ENST00000389040 DEFB113Q30KQ7 82 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 NKAPLQ5M9Q1 402 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 LY6G6FQ5SQ64 297 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 LPCAT3Q6P1A2 487 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 MOB3CQ70IA8 216 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 C6orf201Q7Z4U5 140 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 OR5M8Q8NGP6 311 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 PIGCQ92535 297 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 FOXC2Q99958 501 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 ST6GALNAC5Q9BVH7 336 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 DPCDQ9BVM2 203 aaPredicted RBP8.64□□□□□ -1.03
VPS53-202ENST00000389040 PLEKHJ1Q9NW61 149 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 ZNF230Q9UIE0 474 aaPredicted RBP8.64□□□□□ -1.03
VPS53-202ENST00000389040 ABCA4P78363 2273 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 APCP25054 2843 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 A0A1B0GWJ7 208 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 C9orf170A2RU37 121 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 CEACAM18A8MTB9 384 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 L7N2F9 121 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 IL13RA1P78552 427 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 MRPS11P82912 194 aaKnown RBP8.64□□□□□ -1.03
VPS53-202ENST00000389040 PSG7Q13046 419 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 C6orf183Q5T699 404 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 LIN54Q6MZP7 749 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 ADAD2Q8NCV1 583 aaKnown RBP8.64□□□□□ -1.03
VPS53-202ENST00000389040 CSNK2A3Q8NEV1 391 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 PXT1Q8NFP0 134 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 MARCH1Q8TCQ1 289 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 MITD1Q8WV92 249 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 NEU4Q8WWR8 484 aaPredicted RBP8.64□□□□□ -1.03
VPS53-202ENST00000389040 PHB2Q99623 299 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 IL36GQ9NZH8 169 aa8.64□□□□□ -1.03
VPS53-202ENST00000389040 IGKV1-12A0A0C4DH73 117 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 IQCF6A8MYZ5 107 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 MCRIP1C9JLW8 97 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 ARPC5O15511 151 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 IFNA7P01567 189 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 IGKV1D-12P01611 117 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 AKR1C4P17516 323 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 OR3A3P47888 321 aa8.63□□□□□ -1.03
VPS53-202ENST00000389040 NPY4RP50391 375 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms