RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 METTL9Q9H1A3 318 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 PLA2G5P39877 138 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 ERVS71-1P61550 626 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 MRPS34P82930 218 aaKnown RBP13.76□□□□□ -0.21
CKAP4-201ENST00000378026 P2RY6Q15077 328 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 FAM90A2PQ658T7 463 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 RTL6Q6ICC9 239 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 SLC16A14Q7RTX9 510 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 LRP11Q86VZ4 500 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 D2HGDHQ8N465 521 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 TMEM68Q96MH6 324 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 NDUFAF3Q9BU61 184 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 UCK1Q9HA47 277 aa13.76□□□□□ -0.21
CKAP4-201ENST00000378026 MKRN2OSH3BPM6 223 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 TRAF3IP2O43734 574 aaPredicted RBP13.75□□□□□ -0.21
CKAP4-201ENST00000378026 FBLP22087 321 aaKnown RBP13.75□□□□□ -0.21
CKAP4-201ENST00000378026 CLDN17P56750 224 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 GRB2P62993 217 aaKnown RBP13.75□□□□□ -0.21
CKAP4-201ENST00000378026 RNF4P78317 190 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 FOXO1Q12778 655 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 SLC25A47Q6Q0C1 308 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 TMEM183AQ8IXX5 376 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 LRTM2Q8N967 370 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 RSG1Q9BU20 258 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 XKRY2A2RUG3 117 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 CHST1O43916 411 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 ZNF41P51814 821 aaPredicted RBP13.75□□□□□ -0.21
CKAP4-201ENST00000378026 CD81P60033 236 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 ADIRFQ15847 76 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 SNAI3Q3KNW1 292 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 TCEAL6Q6IPX3 200 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 VSIRQ9H7M9 311 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 LYRM2Q9NU23 88 aaPredicted RBP13.75□□□□□ -0.21
CKAP4-201ENST00000378026 LAMP3Q9UQV4 416 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 A0A1B0GU03 582 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 LOC102723971A0A1B0GUV8 181 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 MPPED1O15442 326 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 CYB5R3P00387 301 aaPredicted RBP13.75□□□□□ -0.21
CKAP4-201ENST00000378026 GNRHRP30968 328 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 ODF3L1Q8IXM7 274 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 ZNF100Q8IYN0 542 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 IL22RA1Q8N6P7 574 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 RBMXL1Q96E39 390 aaKnown RBP13.75□□□□□ -0.21
CKAP4-201ENST00000378026 RBM14Q96PK6 669 aaKnown RBP13.75□□□□□ -0.21
CKAP4-201ENST00000378026 HIST1H2AAQ96QV6 131 aa13.75□□□□□ -0.21
CKAP4-201ENST00000378026 CEBPZOSA8MTT3 80 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 TRDCB7Z8K6 153 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 IGHV4-34P06331 123 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 COX5BP10606 129 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 LBX1P52954 281 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 H3F3AP84243 136 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 CCDC71LQ8N9Z2 235 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 OR10A7Q8NGE5 316 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 OR1P1Q8NH06 330 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 LMX1AQ8TE12 382 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 TMEM37Q8WXS4 190 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 GNPNAT1Q96EK6 184 aaPredicted RBP13.74□□□□□ -0.21
CKAP4-201ENST00000378026 CBLN4Q9NTU7 201 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 PLEK2Q9NYT0 353 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 DKKL1Q9UK85 242 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 H3BMH7 237 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 IL18BPO95998 194 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 OR4A8P0C604 315 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 FOSL2P15408 326 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 TMEM267Q0VDI3 215 aaPredicted RBP13.74□□□□□ -0.21
CKAP4-201ENST00000378026 SLC10A1Q14973 349 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 ZNF66Q6ZN08 573 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 TBC1D26Q86UD7 250 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 RBM24Q9BX46 236 aaKnown RBP13.74□□□□□ -0.21
CKAP4-201ENST00000378026 ZNF442Q9H7R0 627 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 ZNF286AQ9HBT8 521 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 WNT16Q9UBV4 365 aa13.74□□□□□ -0.21
CKAP4-201ENST00000378026 ARHGAP21Q5T5U3 1957 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 IGKV1-27A0A075B6S5 117 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 DVL1O14640 695 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 TNFRSF9Q07011 255 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 PP6455Q8WZ26 134 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 HS3ST3A1Q9Y663 406 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 IGHV3-15A0A0B4J1V0 119 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 NPIPB13A6NJU9 1138 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 NPIPB4C9JG80 1138 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 HBE1P02100 147 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 CA3P07451 260 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 RPS18P62269 152 aaKnown RBP13.73□□□□□ -0.21
CKAP4-201ENST00000378026 IZUMO4Q1ZYL8 232 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 LBHQ53QV2 105 aaPredicted RBP13.73□□□□□ -0.21
CKAP4-201ENST00000378026 ZNF787Q6DD87 383 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 MOB3AQ96BX8 217 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 P4HTMQ9NXG6 502 aa13.73□□□□□ -0.21
CKAP4-201ENST00000378026 ZNF732B4DXR9 585 aa13.72□□□□□ -0.21
CKAP4-201ENST00000378026 M0R135 149 aa13.72□□□□□ -0.21
CKAP4-201ENST00000378026 PPYP01298 95 aa13.72□□□□□ -0.21
CKAP4-201ENST00000378026 ZFP36L1Q07352 338 aaKnown RBP13.72□□□□□ -0.21
CKAP4-201ENST00000378026 PRSS8Q16651 343 aa13.72□□□□□ -0.21
CKAP4-201ENST00000378026 DEFB133Q30KQ1 61 aa13.72□□□□□ -0.21
CKAP4-201ENST00000378026 C1orf53Q5VUE5 145 aa13.72□□□□□ -0.21
CKAP4-201ENST00000378026 ZNF441Q8N8Z8 693 aa13.72□□□□□ -0.21
CKAP4-201ENST00000378026 OR1L3Q8NH93 324 aa13.72□□□□□ -0.21
CKAP4-201ENST00000378026 ZNF799Q96GE5 643 aa13.72□□□□□ -0.21
CKAP4-201ENST00000378026 RPRMQ9NS64 109 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms