RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 GCSHP23434 173 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 AMDHD2Q9Y303 409 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 CACNA1CQ13936 2221 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 CLDN34H7C241 214 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 PDCD6O75340 191 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 LHX8Q68G74 356 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 PRSS42Q7Z5A4 293 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 NUBPLQ8TB37 319 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 SLIRPQ9GZT3 109 aaKnown RBP12.11□□□□□ -0.47
COL4A1-201ENST00000375820 LAMA4Q16363 1823 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 CGB1A6NKQ9 187 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 H7C2G1 150 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 SSBP1Q04837 148 aaKnown RBP12.11□□□□□ -0.47
COL4A1-201ENST00000375820 OR2D3Q8NGH3 330 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 ASB13Q8WXK3 278 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 OR10C1Q96KK4 312 aa12.11□□□□□ -0.47
COL4A1-201ENST00000375820 CHST1O43916 411 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 HAND1O96004 215 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 PGA3P0DJD8 388 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 SLC25A1P53007 311 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 OR8B3Q8NGG8 313 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 ASB10Q8WXI3 467 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 OR8B2Q96RD0 313 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 MFNGO00587 321 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 PLPP2O43688 288 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 RPL34P49207 117 aaKnown RBP12.1□□□□□ -0.47
COL4A1-201ENST00000375820 GAPTQ8N292 157 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 NEIL1Q96FI4 390 aaPredicted RBP12.1□□□□□ -0.47
COL4A1-201ENST00000375820 PCGF1Q9BSM1 259 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 FKBP11Q9NYL4 201 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 IGHV1OR15-9A0A0B4J2B8 117 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 OR5B21A6NL26 309 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 MELTFP08582 738 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 XAF1Q6GPH4 301 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 SLC26A10Q8NG04 563 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 FAM222BQ8WU58 562 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 CACNA1SQ13698 1873 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 IGHV3OR16-12A0A075B7B8 117 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 IL11RAQ14626 422 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 NUFIP2Q7Z417 695 aaKnown RBP12.1□□□□□ -0.47
COL4A1-201ENST00000375820 D2HGDHQ8N465 521 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 MTFP1Q9UDX5 166 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 FBLL1A6NHQ2 334 aaKnown RBP12.1□□□□□ -0.47
COL4A1-201ENST00000375820 IGF2P01344 180 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 C21orf58P58505 322 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 LRRC75AQ8NAA5 344 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 ADAD2Q8NCV1 583 aaKnown RBP12.1□□□□□ -0.47
COL4A1-201ENST00000375820 DYNLRB2Q8TF09 96 aa12.1□□□□□ -0.47
COL4A1-201ENST00000375820 C11orf94C9JXX5 98 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 MDH2P40926 338 aaKnown RBP12.09□□□□□ -0.47
COL4A1-201ENST00000375820 PMELP40967 661 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 SH2D5Q6ZV89 423 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 DTD1Q8TEA8 209 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 ELOVL1Q9BW60 279 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 FLRT3Q9NZU0 649 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 HELTA6NFD8 242 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 OR2T8A6NH00 312 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 SNX22Q96L94 193 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 CCL28Q9NRJ3 127 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 RPS4Y1P22090 263 aaKnown RBP12.09□□□□□ -0.47
COL4A1-201ENST00000375820 HIST3H3Q16695 136 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 SLC23A3Q6PIS1 610 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 OR5R1Q8NH85 324 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 SAP30LQ9HAJ7 183 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 RBFOX3A6NFN3 312 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 KIR2DS2P43631 304 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 CD226Q15762 336 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 MSRB3Q8IXL7 192 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 UCN2Q96RP3 112 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 THYN1Q9P016 225 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 SSC5DA1L4H1 1573 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 MGAT2Q10469 447 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 TCTEX1D1Q8N7M0 179 aa12.09□□□□□ -0.47
COL4A1-201ENST00000375820 MRM2Q9UI43 246 aaKnown RBP12.09□□□□□ -0.47
COL4A1-201ENST00000375820 CST2P09228 141 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 GLULP15104 373 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 AREGP15514 252 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 MDKP21741 143 aaPredicted RBP12.08□□□□□ -0.48
COL4A1-201ENST00000375820 RTN4RQ9BZR6 473 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 LHX9Q9NQ69 397 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 EXOGQ9Y2C4 368 aaKnown RBP12.08□□□□□ -0.48
COL4A1-201ENST00000375820 N4BP2Q86UW6 1770 aaPredicted RBP12.08□□□□□ -0.48
COL4A1-201ENST00000375820 PATE3B3GLJ2 98 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 P01737 135 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 FAM157CP0CG43 387 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 AESQ08117 197 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 SRSF9Q13242 221 aaKnown RBP eCLIP12.08□□□□□ -0.48
COL4A1-201ENST00000375820 SKP2Q13309 424 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 OR4X1Q8NH49 305 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 ZNF488Q96MN9 340 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 COL8A1P27658 744 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 CEACAM3P40198 252 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 MESTQ5EB52 335 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 RAB1CQ92928 201 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 MRGPRFQ96AM1 343 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 PHYHIPLQ96FC7 376 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 ABHD1Q96SE0 405 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 ZNF253O75346 499 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 CXCL10P02778 98 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 SLC35B1P78383 322 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms