RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 GID4Q8IVV7 300 aa11.18□□□□□ -0.62
PTCH1-202ENST00000375271 DNAAF1Q8NEP3 725 aa11.18□□□□□ -0.62
PTCH1-202ENST00000375271 DUX3Q96PT4 197 aa11.18□□□□□ -0.62
PTCH1-202ENST00000375271 P2RX4Q99571 388 aa11.18□□□□□ -0.62
PTCH1-202ENST00000375271 OR6C3Q9NZP0 311 aa11.18□□□□□ -0.62
PTCH1-202ENST00000375271 MRM2Q9UI43 246 aaKnown RBP11.18□□□□□ -0.62
PTCH1-202ENST00000375271 LINC00527Q9UJ94 153 aa11.18□□□□□ -0.62
PTCH1-202ENST00000375271 HHLA2Q9UM44 414 aa11.18□□□□□ -0.62
PTCH1-202ENST00000375271 SIRT4Q9Y6E7 314 aaPredicted RBP11.18□□□□□ -0.62
PTCH1-202ENST00000375271 DNAH9Q9NYC9 4486 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 ODAMA1E959 279 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 ZNF729A6NN14 1252 aaPredicted RBP11.17□□□□□ -0.62
PTCH1-202ENST00000375271 NCBP2LA6PVI3 153 aaKnown RBP11.17□□□□□ -0.62
PTCH1-202ENST00000375271 SEC14L6B5MCN3 397 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 RRP9O43818 475 aaKnown RBP11.17□□□□□ -0.62
PTCH1-202ENST00000375271 PRKACGP22612 351 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 GLIPR1P48060 266 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 NPBWR2P48146 333 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 RAB7AP51149 207 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 MADCAM1Q13477 382 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 NXNL2Q5VZ03 156 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 C18orf65Q6ZTR6 163 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 TMEM179BQ7Z7N9 219 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 HS3ST5Q8IZT8 346 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 C5orf56Q8N8D9 126 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 ZNF565Q8N9K5 539 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 CHST4Q8NCG5 386 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 OR10X1Q8NGY0 326 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 MUC7Q8TAX7 377 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 CORO2AQ92828 525 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 HMG20AQ9NP66 347 aa11.17□□□□□ -0.62
PTCH1-202ENST00000375271 LOC107986453A0A1B0GWG9 222 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 METTL15A6NJ78 407 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 AP4M1O00189 453 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 PRKYO43930 277 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 MS4A2Q01362 244 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 ATXN7L3Q14CW9 347 aaPredicted RBP11.16□□□□□ -0.62
PTCH1-202ENST00000375271 Q6ZSR3 168 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 LCNL1Q6ZST4 164 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 SPATA24Q86W54 205 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 CATSPERDQ86XM0 798 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 ADGRG5Q8IZF4 528 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 OR8H3Q8N146 312 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 STPG2Q8N412 459 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 DRAM1Q8N682 238 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 TCEANCQ8N8B7 351 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 OR10H4Q8NGA5 316 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 HAVCR2Q8TDQ0 301 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 ADGRL4Q9HBW9 690 aa11.16□□□□□ -0.62
PTCH1-202ENST00000375271 KIAA2026Q5HYC2 2103 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 DEGS1O15121 323 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 IGKV1D-33P01593 117 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 IGKV1-33P01594 117 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 C21orf33P30042 268 aaPredicted RBP11.15□□□□□ -0.62
PTCH1-202ENST00000375271 GNG10P50151 68 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 PTGES3Q15185 160 aaKnown RBP11.15□□□□□ -0.62
PTCH1-202ENST00000375271 LTC4SQ16873 150 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 PNLIPRP3Q17RR3 467 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 BCDIN3DQ7Z5W3 292 aaKnown RBP11.15□□□□□ -0.62
PTCH1-202ENST00000375271 TMEM163Q8TC26 289 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 CANT1Q8WVQ1 401 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 RFT1Q96AA3 541 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 SPSB1Q96BD6 273 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 RAX2Q96IS3 184 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 NSL1Q96IY1 281 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 OPALINQ96PE5 141 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 ZNF446Q9NWS9 450 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 GNG8Q9UK08 70 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 ZNF256Q9Y2P7 627 aaPredicted RBP11.15□□□□□ -0.62
PTCH1-202ENST00000375271 SMAD5-AS1Q9Y6J3 95 aa11.15□□□□□ -0.62
PTCH1-202ENST00000375271 KBTBD11-OT1A0A1B0GTJ5 212 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 AQP12BA6NM10 295 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 J3QR06 171 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 HSPB6O14558 160 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 IGHV3-7P01780 117 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 CSN2P05814 226 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 OR2T7P0C7T2 308 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 ATF1P18846 271 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 CHATP28329 748 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 GDNFP39905 211 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 PDZK1IP1Q13113 114 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 GPR50Q13585 617 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 DEFB136Q30KP8 78 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 ZNF260Q3ZCT1 412 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 TMEM244Q5VVB8 128 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 MOB3BQ86TA1 216 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 AQP12AQ8IXF9 295 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 OR5D18Q8NGL1 313 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 IL4I1Q96RQ9 567 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 DCLRE1BQ9H816 532 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 ZMAT4Q9H898 229 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 RHOFQ9HBH0 211 aa11.14□□□□□ -0.63
PTCH1-202ENST00000375271 WARS2Q9UGM6 360 aaKnown RBP11.14□□□□□ -0.63
PTCH1-202ENST00000375271 LSM4Q9Y4Z0 139 aaKnown RBP11.14□□□□□ -0.63
PTCH1-202ENST00000375271 MEIKINA0A087WXM9 373 aa11.13□□□□□ -0.63
PTCH1-202ENST00000375271 A0A087X0M5 115 aa11.13□□□□□ -0.63
PTCH1-202ENST00000375271 A0A1B0GX30 115 aa11.13□□□□□ -0.63
PTCH1-202ENST00000375271 LY6LH3BQJ8 138 aa11.13□□□□□ -0.63
PTCH1-202ENST00000375271 M0R129 80 aa11.13□□□□□ -0.63
PTCH1-202ENST00000375271 MPZL2O60487 215 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms