RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 CPSF4O95639 269 aaKnown RBP3.28□□□□□ -1.88
MCF2-203ENST00000370576 RAB36O95755 333 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 RAB7AP51149 207 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 POLR2HP52434 150 aaKnown RBP3.28□□□□□ -1.88
MCF2-203ENST00000370576 CDH11P55287 796 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 XGP55808 180 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 CLRN1P58418 232 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 RAB8AP61006 207 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 QRFPP83859 136 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 TBC1D28Q2M2D7 210 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 DEFB133Q30KQ1 61 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 SLC27A4Q6P1M0 643 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 ACOT7LQ6ZUV0 252 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 ZSCAN4Q8NAM6 433 aaPredicted RBP3.28□□□□□ -1.88
MCF2-203ENST00000370576 ZNF555Q8NEP9 628 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 OR4C3Q8NH37 302 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 SLC25A46Q96AG3 418 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 C12orf43Q96C57 262 aaKnown RBP3.28□□□□□ -1.88
MCF2-203ENST00000370576 KCTD12Q96CX2 325 aaKnown RBP3.28□□□□□ -1.88
MCF2-203ENST00000370576 MACROD1Q9BQ69 325 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 MND1Q9BWT6 205 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 BARHL1Q9BZE3 327 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 TBL1XR1Q9BZK7 514 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 NAA50Q9GZZ1 169 aaKnown RBP3.28□□□□□ -1.88
MCF2-203ENST00000370576 TMEM27Q9HBJ8 222 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 ACKR4Q9NPB9 350 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 CLN6Q9NWW5 311 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 OCIAD1Q9NX40 245 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 RASL12Q9NYN1 266 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 COPS3Q9UNS2 423 aa3.28□□□□□ -1.88
MCF2-203ENST00000370576 OR6C6A6NF89 314 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 PRR32B1ATL7 298 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 HOXA3O43365 443 aaPredicted RBP3.28□□□□□ -1.89
MCF2-203ENST00000370576 CDC14BO60729 498 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 ENTPD6O75354 484 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 RPLP0P05388 317 aaKnown RBP3.28□□□□□ -1.89
MCF2-203ENST00000370576 OCM2P0CE71 109 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 CTSEP14091 401 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 ALOX5APP20292 161 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 RAB3AP20336 220 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 SSTR4P31391 388 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 CD200P41217 278 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 TPTEP56180 551 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 SMIM21Q3B7S5 101 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 TIGITQ495A1 244 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 MESTQ5EB52 335 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 DCAF10Q5QP82 559 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 TMEM65Q6PI78 240 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 ZNF322Q6U7Q0 402 aaPredicted RBP3.28□□□□□ -1.89
MCF2-203ENST00000370576 TMEM86BQ8N661 226 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 SLC25A43Q8WUT9 341 aaPredicted RBP3.28□□□□□ -1.89
MCF2-203ENST00000370576 ZNRF4Q8WWF5 429 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 RND1Q92730 232 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 RCHY1Q96PM5 261 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 TSPAN32Q96QS1 320 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 CXXC4Q9H2H0 198 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 SLC7A7Q9UM01 511 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 PLA2G2DQ9UNK4 145 aa3.28□□□□□ -1.89
MCF2-203ENST00000370576 NCOA6Q14686 2063 aaPredicted RBP3.27□□□□□ -1.89
MCF2-203ENST00000370576 ZFHX4Q86UP3 3567 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 LAMA3Q16787 3333 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 B4DGG1 531 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 H3BSA7 217 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 PFDN1O60925 122 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 FAM20BO75063 409 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 TRAPPC6AO75865 159 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 OR2B3O76000 313 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 TOX4O94842 621 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 PTHP01270 115 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 LIFP15018 202 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 WT1P19544 449 aaPredicted RBP3.27□□□□□ -1.89
MCF2-203ENST00000370576 FBXW4P57775 412 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 RPS20P60866 119 aaKnown RBP3.27□□□□□ -1.89
MCF2-203ENST00000370576 NHLH2Q02577 135 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 SRSF4Q08170 494 aaKnown RBP3.27□□□□□ -1.89
MCF2-203ENST00000370576 CRYZQ08257 329 aaKnown RBP3.27□□□□□ -1.89
MCF2-203ENST00000370576 SNAI3Q3KNW1 292 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 OR2B11Q5JQS5 317 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 LPCAT3Q6P1A2 487 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 STAC2Q6ZMT1 411 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 C1orf229Q6ZS94 237 aaPredicted RBP3.27□□□□□ -1.89
MCF2-203ENST00000370576 LRRTM1Q86UE6 522 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 ZIC4Q8N9L1 334 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 INO80EQ8NBZ0 244 aaPredicted RBP3.27□□□□□ -1.89
MCF2-203ENST00000370576 OR2T27Q8NH04 317 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 CNIH3Q8TBE1 160 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.27□□□□□ -1.89
MCF2-203ENST00000370576 TMEM37Q8WXS4 190 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 TSLPQ969D9 159 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 OMA1Q96E52 524 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 CXorf58Q96LI9 332 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 PRR25Q96S07 402 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 MCHR1Q99705 422 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 MROQ9BYG7 248 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 DSN1Q9H410 356 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 RHOFQ9HBH0 211 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 SLC17A5Q9NRA2 495 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 HDGFL3Q9Y3E1 203 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 RFNGQ9Y644 331 aa3.27□□□□□ -1.89
MCF2-203ENST00000370576 A0A0G2JMP0 313 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms