RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ATAD5Q96QE3 1844 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 NKX2-6A6NCS4 301 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 CRYAAP02489 173 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 PATE4P0C8F1 98 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 RPL24P83731 157 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 ELOBQ15370 118 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 HLA-DRB5Q30154 266 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 VWA1Q6PCB0 445 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 MANBALQ9NQG1 85 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 RCC2Q9P258 522 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 PPYP01298 95 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 TWSG1Q9GZX9 223 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 SRD5A3Q9H8P0 318 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 OCIAD1Q9NX40 245 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 OR5AC2Q9NZP5 309 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 TRBV23-1A0A0A0MS06 115 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 CENPVL1A0A0U1RR11 272 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 HIST3H3Q16695 136 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 CYB561D1Q8N8Q1 229 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 UBE2ZQ9H832 354 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 C1QL1O75973 258 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 TRGC2P03986 189 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 HOXD4P09016 255 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 H2BFSP57053 126 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 KMT5CQ86Y97 462 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 Q8IYB0 196 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 PRSS3P2Q8NHM4 247 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 LRRC61Q9BV99 259 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 GSX1Q9H4S2 264 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 FAM60AQ9NP50 221 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 PSG11Q9UQ72 335 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 SF3B6Q9Y3B4 125 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 DEFB108AA8MXU0 73 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 ZPLD1Q8TCW7 415 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 STARD10Q9Y365 291 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 APC2O95996 2303 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 A0A1B0GTQ1 180 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 CXorf67Q86X51 503 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 KIAA1456Q9P272 454 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 SVILO95425 2214 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 LOC102724200A0A096LPH7 203 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 PTP4A3O75365 173 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 KHDC3LQ587J8 217 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 VN1R17PQ8TDU5 208 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 TBX15Q96SF7 602 aa17.23■□□□□ 0.35
CCDC88B-202ENST00000356786 DSPPQ9NZW4 1301 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 EIF3GO75821 320 aaKnown RBP eCLIP17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 CYC1P08574 325 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 CISD3P0C7P0 127 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 F2RP25116 425 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 CCL11P51671 97 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 PABPC1L2AQ5JQF8 200 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 ZNF385CQ66K41 422 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 GAPTQ8N292 157 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 BCL2L2Q92843 193 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 TIMM9Q9Y5J7 89 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 MRPS18BQ9Y676 258 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 MTCH2Q9Y6C9 303 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 LMO7DNF2Z398 122 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 TCF21O43680 179 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 MYF5P13349 255 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 SLC25A38Q96DW6 304 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 ZNF576Q9H609 170 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 GNB4Q9HAV0 340 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 M0R2Z0 102 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 CA6P23280 308 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 RPS23P62266 143 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 TMEM255AQ5JRV8 349 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 WIPI1Q5MNZ9 446 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 GOLT1BQ9Y3E0 138 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 PAGE4O60829 102 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 FGF2P09038 288 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 MMP16P51512 607 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 MRPL30Q8TCC3 161 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 HLA-CQ95604 372 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 SMDT1Q9H4I9 107 aa17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 AURKAIP1Q9NWT8 199 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-202ENST00000356786 IGHV5-51A0A0C4DH38 117 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 OR2J3O76001 311 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 HTR1DP28221 377 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 PPP1CAP62136 330 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 OR2D2Q9H210 308 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 KCNK7Q9Y2U2 307 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 KLHDC2Q9Y2U9 406 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 SIT1Q9Y3P8 196 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 BTNL3Q6UXE8 466 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 ASB10Q8WXI3 467 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 CCDC88CQ9P219 2028 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 C6orf15Q6UXA7 325 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 ADAT3Q96EY9 351 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 RHOVQ96L33 236 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 PGLYRP3Q96LB9 341 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 CCL28Q9NRJ3 127 aa17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 KLF13Q9Y2Y9 288 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-202ENST00000356786 RECKO95980 971 aa17.21■□□□□ 0.34
CCDC88B-202ENST00000356786 SKP2Q13309 424 aa17.21■□□□□ 0.34
CCDC88B-202ENST00000356786 SLC35E3Q7Z769 313 aa17.21■□□□□ 0.34
CCDC88B-202ENST00000356786 WBP1LQ9NX94 342 aa17.21■□□□□ 0.34
CCDC88B-202ENST00000356786 SLC25A5P05141 298 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 LIMS1P48059 325 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms