RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CEACAM21Q3KPI0 293 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 FAM71E2Q8N5Q1 922 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 GLYATL2Q8WU03 294 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 GALNT14Q96FL9 552 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 FER1L6-AS2Q96M78 137 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 SYNGR1O43759 233 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 GLP1RP43220 463 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 TMPRSS7Q7RTY8 843 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 TAF9BQ9HBM6 251 aa16.61■□□□□ 0.25
COL9A3-201ENST00000343916 PPYP01298 95 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 PVALBP20472 110 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-201ENST00000343916 RNPS1Q15287 305 aaKnown RBP16.6■□□□□ 0.25
COL9A3-201ENST00000343916 ZNF488Q96MN9 340 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 PRRX2Q99811 253 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 TLNRD1Q9H1K6 362 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 KLF2Q9Y5W3 355 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-201ENST00000343916 PHF1O43189 567 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-201ENST00000343916 SS18L1O75177 396 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-201ENST00000343916 IL18BPO95998 194 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 MBPP02686 304 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-201ENST00000343916 COX5BP10606 129 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 ARR3P36575 388 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 WNT5AP41221 380 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 PLP2Q04941 152 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 SMCO1Q147U7 214 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 TSC22D1Q15714 1073 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 Q8NFD4 153 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 MSI2Q96DH6 328 aaKnown RBP16.6■□□□□ 0.25
COL9A3-201ENST00000343916 TREM1Q9NP99 234 aa16.6■□□□□ 0.25
COL9A3-201ENST00000343916 FBXO9Q9UK97 447 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-201ENST00000343916 CD300LBA8K4G0 201 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 FBXO24O75426 580 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 H2AFB1P0C5Y9 115 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 FGF12P61328 243 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 HERV-K104P61576 105 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 ZFP62Q8NB50 900 aaPredicted RBP16.59■□□□□ 0.25
COL9A3-201ENST00000343916 OR52M1Q8NGK5 317 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 TP53RKQ96S44 253 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 GPHA2Q96T91 129 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 SPRR3Q9UBC9 169 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 FBXL17Q9UF56 701 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 ESPL1Q14674 2120 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 ZNF98A6NK75 572 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 SCTP09683 121 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 TMEM33P57088 247 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 SPATA46Q5T0L3 261 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 MEX3BQ6ZN04 569 aaKnown RBP16.59■□□□□ 0.25
COL9A3-201ENST00000343916 LIAT1Q6ZQX7 453 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 OR4A4PQ8NGN8 299 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 NEK7Q8TDX7 302 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 ARL11Q969Q4 196 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 HRH4Q9H3N8 390 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 RNF122Q9H9V4 155 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 TMEM9BQ9NQ34 198 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 LPAR3Q9UBY5 353 aa16.59■□□□□ 0.25
COL9A3-201ENST00000343916 CST4P01036 141 aa16.58■□□□□ 0.25
COL9A3-201ENST00000343916 CD46P15529 392 aa16.58■□□□□ 0.25
COL9A3-201ENST00000343916 NPBWR1P48145 328 aa16.58■□□□□ 0.25
COL9A3-201ENST00000343916 ARG2P78540 354 aa16.58■□□□□ 0.25
COL9A3-201ENST00000343916 CLN3Q13286 438 aa16.58■□□□□ 0.25
COL9A3-201ENST00000343916 MST1LQ2TV78 715 aa16.58■□□□□ 0.25
COL9A3-201ENST00000343916 ERGIC1Q969X5 290 aa16.58■□□□□ 0.25
COL9A3-201ENST00000343916 AMDHD2Q9Y303 409 aa16.58■□□□□ 0.25
COL9A3-201ENST00000343916 TNRC6AQ8NDV7 1962 aaKnown RBP16.58■□□□□ 0.25
COL9A3-201ENST00000343916 EP300Q09472 2414 aaPredicted RBP16.58■□□□□ 0.24
COL9A3-201ENST00000343916 TRAPPC2LH3BP13 241 aa16.58■□□□□ 0.24
COL9A3-201ENST00000343916 PMP22Q01453 160 aa16.58■□□□□ 0.24
COL9A3-201ENST00000343916 BSCL2Q96G97 398 aaPredicted RBP16.58■□□□□ 0.24
COL9A3-201ENST00000343916 C18orf12Q96KH6 178 aa16.58■□□□□ 0.24
COL9A3-201ENST00000343916 SUCNR1Q9BXA5 334 aa16.58■□□□□ 0.24
COL9A3-201ENST00000343916 MED12LQ86YW9 2145 aa16.58■□□□□ 0.24
COL9A3-201ENST00000343916 WDYHV1Q96HA8 205 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 IP6K3Q96PC2 410 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 SYT3Q9BQG1 590 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 RSRP1Q9BUV0 290 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 FAM96BQ9Y3D0 163 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 A0A1W2PR80 420 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 GNRHRP30968 328 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 APLNRP35414 380 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 HERPUD1Q15011 391 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 C17orf78Q8N4C9 275 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 SLC35G3Q8N808 338 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 SECTM1Q8WVN6 248 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 HIST1H2AAQ96QV6 131 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 ESRP2Q9H6T0 727 aaKnown RBP16.57■□□□□ 0.24
COL9A3-201ENST00000343916 Q9N2K0 584 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 PLA2G2EQ9NZK7 142 aa16.57■□□□□ 0.24
COL9A3-201ENST00000343916 TAAR5O14804 337 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 NAPSAO96009 420 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 ZNF806P0C7X5 589 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 UCP3P55916 312 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 CTAG1AP78358 180 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 ZNF766Q5HY98 468 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 OR2T2Q6IF00 324 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 MDP1Q86V88 176 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 SPAG16Q8N0X2 631 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 OR1K1Q8NGR3 316 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 TRGV5A0A0B4J1U4 118 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 LPAR6P43657 344 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 RAB13P51153 203 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms