RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 KPTNQ9Y664 436 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 AUP1Q9Y679 476 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 GTF3C1Q12789 2109 aa10.4□□□□□ -0.74
USP1-201ENST00000339950 ZNF816-ZNF321PA0A0X1KG74 233 aa10.4□□□□□ -0.75
USP1-201ENST00000339950 TFF1P04155 84 aa10.4□□□□□ -0.75
USP1-201ENST00000339950 IGFBP3P17936 291 aaPredicted RBP10.4□□□□□ -0.75
USP1-201ENST00000339950 HNF1AP20823 631 aa10.4□□□□□ -0.75
USP1-201ENST00000339950 GUK1Q16774 197 aa10.4□□□□□ -0.75
USP1-201ENST00000339950 CXorf66Q5JRM2 361 aaPredicted RBP10.4□□□□□ -0.75
USP1-201ENST00000339950 PLK3Q9H4B4 646 aa10.4□□□□□ -0.75
USP1-201ENST00000339950 OBP2BQ9NPH6 170 aa10.4□□□□□ -0.75
USP1-201ENST00000339950 CCL28Q9NRJ3 127 aa10.4□□□□□ -0.75
USP1-201ENST00000339950 SLC2A9Q9NRM0 540 aa10.4□□□□□ -0.75
USP1-201ENST00000339950 HSPB2A8KAH6 182 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 TMEM14DPA8MWL7 114 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 PMP22Q01453 160 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 HSPB2Q16082 182 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 CST9LP1Q5W188 147 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 CADM4Q8NFZ8 388 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 LYZL4Q96KX0 146 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 ARRDC1-AS1Q9H2J1 176 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 DUSP13Q9UII6 198 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 CREBBPQ92793 2442 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 C7orf77A4D0Y5 90 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 AQP7P3A6NL99 342 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 NDUFS6O75380 124 aaKnown RBP10.39□□□□□ -0.75
USP1-201ENST00000339950 IFNA5P01569 189 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 SCTP09683 121 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 PPP1CCP36873 323 aaKnown RBP10.39□□□□□ -0.75
USP1-201ENST00000339950 RPL23AP62750 156 aaKnown RBP10.39□□□□□ -0.75
USP1-201ENST00000339950 RAB1AP62820 205 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 ACER2Q5QJU3 275 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 DCAF12Q5T6F0 453 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 NSUN5P2Q63ZY6 315 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 CMTM1Q8IZ96 169 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 LGI3Q8N145 548 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 ADPRHL1Q8NDY3 354 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 OR5C1Q8NGR4 320 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 LPAR3Q9UBY5 353 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 ERRFI1Q9UJM3 462 aaPredicted RBP10.39□□□□□ -0.75
USP1-201ENST00000339950 RNF224P0DH78 156 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 RAB4BP61018 213 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 PSG4Q00888 419 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 ADIRFQ15847 76 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 ARHGEF39Q8N4T4 335 aa10.39□□□□□ -0.75
USP1-201ENST00000339950 IGHV3-43A0A0B4J1X8 118 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 MSTNO14793 375 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 MMP7P09237 267 aaPredicted RBP10.38□□□□□ -0.75
USP1-201ENST00000339950 IGHV3-43DP0DP04 118 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 FABP6P51161 128 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 ZNF154Q13106 437 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 HIKESHIQ53FT3 197 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 CALHM1Q8IU99 346 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 SKA3Q8IX90 412 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 RARRES2Q99969 163 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 SLC7A10Q9NS82 523 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 CBR3O75828 277 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 METTL15P1P0C7V9 234 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 BCL3P20749 454 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 B2MP61769 119 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 SLC25A47Q6Q0C1 308 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 ZNF383Q8NA42 475 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 MARS2Q96GW9 593 aaKnown RBP10.38□□□□□ -0.75
USP1-201ENST00000339950 RTBDNQ9BSG5 229 aaPredicted RBP10.38□□□□□ -0.75
USP1-201ENST00000339950 SLC26A1Q9H2B4 701 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 TREM2Q9NZC2 230 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 TIMM10BQ9Y5J6 103 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 INTS1Q8N201 2190 aaKnown RBP10.38□□□□□ -0.75
USP1-201ENST00000339950 CD300LBA8K4G0 201 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 TMEM127O75204 238 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 CLDN1O95832 211 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 KRASP01116 189 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 MAGEA5P43359 124 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 GSK3AP49840 483 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 SLC35G3Q8N808 338 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 CCDC71LQ8N9Z2 235 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 OR10AD1Q8NGE0 317 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 LOXL2Q9Y4K0 774 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 LIPGQ9Y5X9 500 aa10.38□□□□□ -0.75
USP1-201ENST00000339950 DSPP15924 2871 aaKnown RBP10.38□□□□□ -0.75
USP1-201ENST00000339950 ARGFXA6NJG6 315 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 CD74P04233 296 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 FSTP19883 344 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 TGFBR3Q03167 851 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 DTX1Q86Y01 620 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 GAPTQ8N292 157 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 RBMXL1Q96E39 390 aaKnown RBP10.37□□□□□ -0.75
USP1-201ENST00000339950 UTP23Q9BRU9 249 aaKnown RBP10.37□□□□□ -0.75
USP1-201ENST00000339950 OPA3Q9H6K4 179 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 PATZ1Q9HBE1 687 aaKnown RBP10.37□□□□□ -0.75
USP1-201ENST00000339950 RAB18Q9NP72 206 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 KIAA1549LQ6ZVL6 1849 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 ANKRD30BLA7E2S9 258 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 MBPP02686 304 aaPredicted RBP10.37□□□□□ -0.75
USP1-201ENST00000339950 SLC25A4P12235 298 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 ZNF708P17019 499 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 APLNRP35414 380 aa10.37□□□□□ -0.75
USP1-201ENST00000339950 CEBPDP49716 269 aaPredicted RBP10.37□□□□□ -0.75
USP1-201ENST00000339950 SUCLG1P53597 346 aaKnown RBP10.37□□□□□ -0.75
USP1-201ENST00000339950 DSCR4P56555 118 aaPredicted RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms