RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 IGHEP01854 428 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 CFIP05156 583 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 DBIP07108 87 aaKnown RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 CD46P15529 392 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 OR10J1P30954 320 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 TMEM50BP56557 158 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 PPP1CAP62136 330 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 UBE2V1Q13404 147 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 WDR25Q64LD2 544 aaPredicted RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 CRIP3Q6Q6R5 217 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 VHLLQ6RSH7 139 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 Q6ZVH6 145 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 Q6ZWC4 215 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 LRP11Q86VZ4 500 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 OIT3Q8WWZ8 545 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 MRPL24Q96A35 216 aaKnown RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF514Q96K75 400 aaPredicted RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 NIPSNAP3BQ9BS92 247 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 MAGT1Q9H0U3 335 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 STARD5Q9NSY2 213 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 GSKIPQ9P0R6 139 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 CKLFQ9UBR5 152 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 APOBEC3BQ9UH17 382 aaKnown RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 MRPS28Q9Y2Q9 187 aaKnown RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 A0A1W2PQM1 296 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 M0QZ24 198 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 OPN1MWP04001 364 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 TYMSP04818 313 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 OPN1MW2P0DN77 364 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 OPN1MW3P0DN78 364 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 CD33P20138 364 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 FASLGP48023 281 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 RPL15P61313 204 aaKnown RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 ELOA3BQ3SY89 546 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 DCST2Q5T1A1 773 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 DPY19L4Q7Z388 723 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 H1FOOQ8IZA3 346 aaPredicted RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 TMEM256Q8N2U0 113 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 METTL27Q8N6F8 245 aaPredicted RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 SLC26A10Q8NG04 563 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 ELOA3Q8NG57 546 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 OR10S1Q8NGN2 331 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 FAM213BQ8TBF2 198 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 LIPHQ8WWY8 451 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 ZCCHC14Q8WYQ9 949 aaKnown RBP4.85□□□□□ -1.63
CSDE1-202ENST00000339438 COMMD4Q9H0A8 199 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 LIME1Q9H400 295 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 B9D1Q9UPM9 204 aa4.85□□□□□ -1.63
CSDE1-202ENST00000339438 CHD6Q8TD26 2715 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 LOC101059948A0A1B0GTJ6 334 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 GPR137BO60478 399 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 SCGNO76038 276 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 BGLAPP02818 100 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 MPLP40238 635 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 CLDN6P56747 220 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 ROM1Q03395 351 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 SLC17A1Q14916 467 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 IAH1Q2TAA2 248 aaPredicted RBP4.84□□□□□ -1.63
CSDE1-202ENST00000339438 TRMT12Q53H54 448 aaKnown RBP4.84□□□□□ -1.63
CSDE1-202ENST00000339438 COL5A1-AS1Q5SY13 56 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF705AQ6ZN79 300 aaPredicted RBP4.84□□□□□ -1.63
CSDE1-202ENST00000339438 OTOSQ8NHW6 89 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 RNF138Q8WVD3 245 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 OR8B4Q96RC9 309 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 TP53RKQ96S44 253 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 PCGF1Q9BSM1 259 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 ALKBH7Q9BT30 221 aaPredicted RBP4.84□□□□□ -1.63
CSDE1-202ENST00000339438 METTL8Q9H825 291 aaKnown RBP4.84□□□□□ -1.63
CSDE1-202ENST00000339438 SRA1Q9HD15 236 aaKnown RBP4.84□□□□□ -1.63
CSDE1-202ENST00000339438 SLC2A9Q9NRM0 540 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 TRAV39A0A0B4J263 110 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 HSBP1L1C9JCN9 74 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 MMP23AO75900 390 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 CNOT4O95628 575 aaKnown RBP4.84□□□□□ -1.63
CSDE1-202ENST00000339438 CSNK2A2P19784 350 aaPredicted RBP4.84□□□□□ -1.63
CSDE1-202ENST00000339438 NFATC4Q14934 902 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 MMDQ15546 238 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 OTPQ5XKR4 325 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 P4HA3Q7Z4N8 544 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 CMTM1Q8IZ96 169 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 FBXL14Q8N1E6 418 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF721Q8TF20 911 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 TMEM18Q96B42 140 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 IMMP2LQ96T52 175 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 CMKLR1Q99788 373 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 AIF1LQ9BQI0 150 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 G6PC2Q9NQR9 355 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 GPR84Q9NQS5 396 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 PILRAQ9UKJ1 303 aa4.84□□□□□ -1.63
CSDE1-202ENST00000339438 TRAV1-1A0A0B4J248 108 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 DCDC2BA2VCK2 349 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 FAM221AA4D161 298 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 E5RGE8 158 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 PIAS2O75928 621 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 ISG15P05161 165 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 MMP9P14780 707 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 ATP6V0CP27449 155 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 CDKN1AP38936 164 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 MGAT2Q10469 447 aa4.84□□□□□ -1.64
CSDE1-202ENST00000339438 PNRC1Q12796 327 aaPredicted RBP4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms