RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 MRPS15P82914 257 aaKnown RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 IL13RA2Q14627 380 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 MEF2DQ14814 521 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ARL6IP1Q15041 203 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 RBMS2Q15434 407 aaKnown RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 MPV17LQ2QL34 196 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 FAM201AQ5SY85 155 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 C20orf204Q6ZNR8 217 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ZNF554Q86TJ5 538 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 SPERTQ8NA61 448 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 OR52B4Q8NGK2 314 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 OR5H2Q8NGV7 314 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 LILRB1Q8NHL6 650 aaPredicted RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 PLPPR1Q8TBJ4 325 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 CAPSLQ8WWF8 208 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 ITLN2Q8WWU7 325 aaPredicted RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 DEDD2Q8WXF8 326 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 DACT3Q96B18 629 aaPredicted RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 DPCDQ9BVM2 203 aaPredicted RBP3.49□□□□□ -1.85
MCF2-201ENST00000338585 GHITMQ9H3K2 345 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 LIME1Q9H400 295 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 PLK3Q9H4B4 646 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 HES4Q9HCC6 221 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 NGBQ9NPG2 151 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 C12orf4Q9NQ89 552 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 DCAF16Q9NXF7 216 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 NDRG3Q9UGV2 375 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 VSIG4Q9Y279 399 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 PLEKHA6Q9Y2H5 1048 aa3.49□□□□□ -1.85
MCF2-201ENST00000338585 IGHV3OR15-7A0A075B7D8 119 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 C7orf66A4D0T2 115 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 DEFB108AA8MXU0 73 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 DISC1C4P0D8 188 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 MCRIP1C9JLW8 97 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 SLC33A1O00400 549 aaPredicted RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 PSPNO60542 156 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 HAND1O96004 215 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 NAPSAO96009 420 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 IFNA6P05013 189 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 CD3EP07766 207 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 PI3P19957 117 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 TBPP20226 339 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 GLRA1P23415 457 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 DTYMKP23919 212 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 LOXP28300 417 aaPredicted RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 SERPINF1P36955 418 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 OR3A3P47888 321 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 NPY4RP50391 375 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 UBE2MP61081 183 aaKnown RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 TNFAIP6P98066 277 aaPredicted RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 SORDQ00796 357 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 ATXN7L3Q14CW9 347 aaPredicted RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 ZNF146Q15072 292 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 CHRFAM7AQ494W8 412 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 VAX1Q5SQQ9 334 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 ATPAF1Q5TC12 328 aaPredicted RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 ACP7Q6ZNF0 438 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 SLC36A1Q7Z2H8 476 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 TMED4Q7Z7H5 227 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 AKAP14Q86UN6 197 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 Q8IYB0 196 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 GCSAMQ8N6F7 178 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 OR5AP2Q8NGF4 316 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 MARCH1Q8TCQ1 289 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 PIK3IP1Q96FE7 263 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 TMPRSS13Q9BYE2 586 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 PPA2Q9H2U2 334 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 CHMP1AQ9HD42 196 aaPredicted RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 SLC2A8Q9NY64 477 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 ETAA1Q9NY74 926 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 EHFQ9NZC4 300 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 ANXA10Q9UJ72 324 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 ZNF221Q9UK13 617 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 TMEM82A0PJX8 343 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 MEX3AA1L020 520 aaKnown RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 HMX3A6NHT5 357 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 RFPL4AA6NLU0 287 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 RFPL4AL1F8VTS6 287 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 C19orf84I3L1E1 186 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 CCNKO75909 580 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 CLDN14O95500 239 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 ACAA1P09110 424 aaPredicted RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 GSTT2P0CG29 244 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 RCC1P18754 421 aaPredicted RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 CD80P33681 288 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 RAG2P55895 527 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 ARPC4P59998 168 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 RRAS2P62070 204 aaPredicted RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 TSPAN5P62079 268 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 CD83Q01151 205 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 BAMBIQ13145 260 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 CDK10Q15131 360 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 FCN2Q15485 313 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 MST1LQ2TV78 715 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 PAN3Q58A45 887 aaKnown RBP3.48□□□□□ -1.85
MCF2-201ENST00000338585 IGSF11Q5DX21 431 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 BEX5Q5H9J7 111 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 AADACL3Q5VUY0 350 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 SSX8Q7RTT4 187 aa3.48□□□□□ -1.85
MCF2-201ENST00000338585 OVCH2Q7RTZ1 564 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms