RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ABLIM2Q6H8Q1 611 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 SPPL3Q8TCT6 385 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 MRPL13Q9BYD1 178 aaKnown RBP7.04□□□□□ -1.28
CIITA-201ENST00000324288 CA2P00918 260 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 SHBQ15464 509 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 ADAT3Q96EY9 351 aaPredicted RBP7.04□□□□□ -1.28
CIITA-201ENST00000324288 KLF13Q9Y2Y9 288 aaPredicted RBP7.04□□□□□ -1.28
CIITA-201ENST00000324288 FIGNL2A6NMB9 653 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 MFNGO00587 321 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 CAPZBP47756 277 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 SHHQ15465 462 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 ALG14Q96F25 216 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 CHRDL1Q9BU40 450 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 COA4Q9NYJ1 87 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 MELTFP08582 738 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 ZGLP1P0C6A0 271 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 CD22P20273 847 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 PNLIPRP3Q17RR3 467 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 OR11G2Q8NGC1 345 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 ZNF426Q9BUY5 554 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 HS3ST3A1Q9Y663 406 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 B4DEV8 164 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 HPP00738 406 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 HRASP01112 189 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 ORM2P19652 201 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 KLK2P20151 261 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 SSBP1Q04837 148 aaKnown RBP7.04□□□□□ -1.28
CIITA-201ENST00000324288 LBHQ53QV2 105 aaPredicted RBP7.04□□□□□ -1.28
CIITA-201ENST00000324288 OR1K1Q8NGR3 316 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 PELI1Q96FA3 418 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 RAB33BQ9H082 229 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 R4GN57 208 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 GSTZ1O43708 216 aaPredicted RBP7.04□□□□□ -1.28
CIITA-201ENST00000324288 LDLRAD3Q86YD5 345 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 ARIH2OSQ8N7S6 290 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 S1PR5Q9H228 398 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 SH2D2AQ9NP31 389 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 MTFP1Q9UDX5 166 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 C11orf94C9JXX5 98 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 ORM1P02763 201 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 LYRM7Q5U5X0 104 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 ZNF71Q9NQZ8 489 aaPredicted RBP7.04□□□□□ -1.28
CIITA-201ENST00000324288 SLC6A13Q9NSD5 602 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 KCNE3Q9Y6H6 103 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 TRAV39A0A0B4J263 110 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 IGFBP6P24592 240 aaPredicted RBP7.04□□□□□ -1.28
CIITA-201ENST00000324288 EMP1P54849 157 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 RPEQ96AT9 228 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 AUP1Q9Y679 476 aa7.04□□□□□ -1.28
CIITA-201ENST00000324288 M0QZK8 103 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 GGCTO75223 188 aaKnown RBP7.03□□□□□ -1.28
CIITA-201ENST00000324288 MT-CO3P00414 261 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 ADAD2Q8NCV1 583 aaKnown RBP7.03□□□□□ -1.28
CIITA-201ENST00000324288 OR5AU1Q8NGC0 362 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 TMEM30CPA0ZSE6 113 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 UPK1AO00322 258 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 POLR2GP62487 172 aaKnown RBP eCLIP7.03□□□□□ -1.28
CIITA-201ENST00000324288 CDK2AP1O14519 115 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 LINC01565O15544 149 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 C12orf73Q69YU5 71 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 TMEM65Q6PI78 240 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 NKX2-6A6NCS4 301 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 NSUN5P2Q63ZY6 315 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 KIRREL2Q6UWL6 708 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 OR1F12Q8NHA8 337 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 BAHD1Q8TBE0 780 aaPredicted RBP7.03□□□□□ -1.28
CIITA-201ENST00000324288 KCNE4Q8WWG9 221 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 ELOBQ15370 118 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 ZNF774Q6NX45 483 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 D2HGDHQ8N465 521 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 OR2A5Q96R48 311 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 THADAQ6YHU6 1953 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 PTGFRP43088 359 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 MOGAT1Q96PD6 335 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 CLEC1BQ9P126 229 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 OR4F17Q8NGA8 305 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 NDUFB3O43676 98 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 LYZL6O75951 148 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 CD99P14209 185 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 CRYABP02511 175 aaKnown RBP7.03□□□□□ -1.28
CIITA-201ENST00000324288 FPR2P25090 351 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 SPATA45Q537H7 98 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 LINC00299Q6ZSB3 139 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 CARFQ8N187 725 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 FBXL6Q8N531 539 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 HERVK_113P61574 105 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 GCSAMLQ5JQS6 135 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 WIPI1Q5MNZ9 446 aaPredicted RBP7.03□□□□□ -1.28
CIITA-201ENST00000324288 SARAFQ96BY9 339 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 SOSTQ9BQB4 213 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 PITPNC1Q9UKF7 332 aa7.03□□□□□ -1.28
CIITA-201ENST00000324288 CD81P60033 236 aa7.02□□□□□ -1.29
CIITA-201ENST00000324288 RTP5Q14D33 572 aa7.02□□□□□ -1.29
CIITA-201ENST00000324288 EMC4Q5J8M3 183 aa7.02□□□□□ -1.29
CIITA-201ENST00000324288 C16orf47Q6ZP98 133 aaPredicted RBP7.02□□□□□ -1.29
CIITA-201ENST00000324288 RBPMS2Q6ZRY4 209 aaKnown RBP7.02□□□□□ -1.29
CIITA-201ENST00000324288 ST6GALNAC6Q969X2 333 aa7.02□□□□□ -1.29
CIITA-201ENST00000324288 ZNF256Q9Y2P7 627 aaPredicted RBP7.02□□□□□ -1.29
CIITA-201ENST00000324288 ISLRO14498 428 aa7.02□□□□□ -1.29
CIITA-201ENST00000324288 CCR2P41597 374 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms