RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 CACNG5Q9UF02 275 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 TCF20Q9UGU0 1960 aaKnown RBP12.88□□□□□ -0.35
TCOF1-201ENST00000323668 ACTL6BO94805 426 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 METTL15P1P0C7V9 234 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 GAPTQ8N292 157 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 SLC25A28Q96A46 364 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 FAM210BQ96KR6 192 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 MSGN1A6NI15 193 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 KRASP01116 189 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 LIFP15018 202 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 SNCAP37840 140 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 PRAMEF5Q5TYX0 476 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 PRAMEF6Q5VXH4 476 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 TMEM178AQ8NBL3 297 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 OR2Y1Q8NGV0 311 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 WNT16Q9UBV4 365 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 DUSP13Q9UII6 198 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 ASXL3Q9C0F0 2248 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 EPOPA6NHQ4 379 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 DNASE2O00115 360 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-201ENST00000323668 OR8U8P0C7N1 319 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 ATP6V0CP27449 155 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 SPATA46Q5T0L3 261 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 MSI2Q96DH6 328 aaKnown RBP12.88□□□□□ -0.35
TCOF1-201ENST00000323668 TMEM38BQ9NVV0 291 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 KLF13Q9Y2Y9 288 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-201ENST00000323668 LOXL2Q9Y4K0 774 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 C1QL1O75973 258 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 MBPP02686 304 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-201ENST00000323668 PLAC9Q5JTB6 97 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 ZNF574Q6ZN55 896 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-201ENST00000323668 POC1AQ8NBT0 407 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 SLC7A10Q9NS82 523 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 UBE2L5PA0A1B0GUS4 154 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 CCL2P13500 99 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 BATFQ16520 125 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 P4HTMQ9NXG6 502 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 MIOXQ9UGB7 285 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 HLA-GP17693 338 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 EDDM3BP56851 147 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 M1APQ8TC57 530 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 OR2H1Q9GZK4 316 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 DEFB127Q9H1M4 99 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 SMDT1Q9H4I9 107 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 GPR27Q9NS67 375 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 A0A0J9YW62 118 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 IGHV5-10-1A0A0J9YXX1 117 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 CRYM-AS1A6NIL9 109 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 DNPH1O43598 174 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 SELEP16581 610 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 MST1P26927 711 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 ACOT6Q3I5F7 207 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-201ENST00000323668 GALMQ96C23 342 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 FAM173AQ9BQD7 235 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 CCL28Q9NRJ3 127 aa12.87□□□□□ -0.35
TCOF1-201ENST00000323668 MAP1LC3B2A6NCE7 125 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 TRDCB7Z8K6 153 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 PHOX2AO14813 284 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 ACTL6AO96019 429 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 ZNF735P0CB33 412 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 FABP4P15090 132 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 FOXO1Q12778 655 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 DHRS7BQ6IAN0 325 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-201ENST00000323668 MOB1BQ7L9L4 216 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 OR10V1Q8NGI7 309 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 RTN4RQ9BZR6 473 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 MAP1LC3BQ9GZQ8 125 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 H3BQ15 152 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 LINC00271P0C7V0 271 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 UBE2V2Q15819 145 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 OR11L1Q8NGX0 322 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 MED12Q93074 2177 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 DHRS7CA6NNS2 312 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 NPIPB7O75200 414 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 ZNF708P17019 499 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 COL19A1Q14993 1142 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 DHRS11Q6UWP2 260 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 ATP5SQ99766 215 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 USB1Q9BQ65 265 aaKnown RBP12.86□□□□□ -0.35
TCOF1-201ENST00000323668 TRPM7Q96QT4 1865 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 THSD7BQ9C0I4 1608 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 PNRC1Q12796 327 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-201ENST00000323668 ZNF154Q13106 437 aa12.86□□□□□ -0.35
TCOF1-201ENST00000323668 CARHSP1Q9Y2V2 147 aaKnown RBP12.86□□□□□ -0.35
TCOF1-201ENST00000323668 SEC14L6B5MCN3 397 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 CA6P23280 308 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 Q8IYB0 196 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 SLC25A45Q8N413 288 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 PTPRZ1P23471 2315 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-201ENST00000323668 SYNGR2O43760 224 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 CA11O75493 328 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 DLK1P80370 383 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 BAGE3Q86Y29 109 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 BAGE2Q86Y30 109 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 ANAPC1Q9H1A4 1944 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 ABCA7Q8IZY2 2146 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 A0A1W2PR77 199 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 PRR19A6NJB7 356 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 OR5B21A6NL26 309 aa12.85□□□□□ -0.35
TCOF1-201ENST00000323668 FGF7P21781 194 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms