RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C7orf72A4D263 438 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 PPIAL4DF5H284 164 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 RPS23P62266 143 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 AGBL4Q5VU57 503 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 TMEM25Q86YD3 366 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 FAM71AQ8IYT1 594 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 OR52N1Q8NH53 320 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 OXGR1Q96P68 337 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 C14orf132Q9NPU4 83 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 FOXA2Q9Y261 457 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 LAMA4Q16363 1823 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 EVI2AP22794 236 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 PTGER1P34995 402 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 FOXA1P55317 472 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 LY6KQ17RY6 165 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 B3GNT8Q7Z7M8 397 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 WFDC12Q8WWY7 111 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 FCRL5Q96RD9 977 aa6.81□□□□□ -1.32
LIMCH1-201ENST00000313860 IGHV1-69-2A0A0G2JMI3 117 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 CLDN11O75508 207 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 MMP16P51512 607 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 INSM1Q01101 510 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 KIR2DS1Q14954 304 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 TMEM86AQ8N2M4 240 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 ARRDC1Q8N5I2 433 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 OR52N5Q8NH56 324 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 ABHD4Q8TB40 342 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 SPSB4Q96A44 273 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 SIGLEC11Q96RL6 698 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 PDZD7Q9H5P4 517 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 TMEM134Q9H6X4 195 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 GP6Q9HCN6 339 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 TNFSF18Q9UNG2 199 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 RGPD1P0DJD0 1748 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 BTNL10A8MVZ5 291 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 DEFB108AA8MXU0 73 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 SIGLEC5O15389 551 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 RS1O15537 224 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 OR2T7P0C7T2 308 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 MPC1LP0DKB6 136 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 FUT3P21217 361 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 APOBEC3AP31941 199 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 RBPJQ06330 500 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 OR8D4Q8NGM9 314 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 C2orf15Q8WU43 125 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 CYB5D2Q8WUJ1 264 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 C7orf43Q8WVR3 580 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 SLC2A11Q9BYW1 496 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 MS4A7Q9GZW8 240 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 LPAR3Q9UBY5 353 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 HDGFL3Q9Y3E1 203 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 ATP23Q9Y6H3 246 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 SH2D1BO14796 132 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 TPSB2P20231 275 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 FDXRP22570 491 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 PXNP49023 591 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 TPSAB1Q15661 275 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 KLRG1Q96E93 195 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 QTRT1Q9BXR0 403 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 IL36RNQ9UBH0 155 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 CACFD1Q9UGQ2 172 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 COL15A1P39059 1388 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 SMAD6O43541 496 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 PTHLHP12272 177 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 LAG3P18627 525 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 RAE1P78406 368 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 EMX1Q04741 257 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 CDC20Q12834 499 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 KIAA1644Q3SXP7 199 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 ABHD1Q96SE0 405 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 SMDT1Q9H4I9 107 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 C5AR2Q9P296 337 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 FAM198AQ9UFP1 575 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 PTGDR2Q9Y5Y4 395 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 HCFC2Q9Y5Z7 792 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 H3BMH7 237 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 K7ESF4 209 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 MFAP2P55001 183 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 UCP3P55916 312 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 HIKESHIQ53FT3 197 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 GJC3Q8NFK1 279 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 KLF12Q9Y4X4 402 aa6.8□□□□□ -1.32
LIMCH1-201ENST00000313860 hADV29S1A0JD25 119 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 ZBTB42B2RXF5 422 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 TCRAP04437 139 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 CR2P20023 1033 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 WDR5P61964 334 aaKnown RBP6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 SPICQ8N5J4 248 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 RPS4Y2Q8TD47 263 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 ABHD17AQ96GS6 310 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 C5orf30Q96GV9 206 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 MRPL18Q9H0U6 180 aaKnown RBP6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 SH2D2AQ9NP31 389 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 ZNF257Q9Y2Q1 563 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 HS3ST3A1Q9Y663 406 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 TMEM2Q9UHN6 1383 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 SPATA31A7Q8IWB4 1347 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 IGHV3-64A0A075B6Q5 118 aa6.79□□□□□ -1.32
LIMCH1-201ENST00000313860 FAM74A7A6NL05 159 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms