RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 PAM16Q9Y3D7 125 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 CD99P14209 185 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 TCL1AP56279 114 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 FNDC7Q5VTL7 733 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 LYZL2Q7Z4W2 148 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 SLC35E3Q7Z769 313 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 OR6X1Q8NH79 312 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 C10orf35Q96D05 121 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 RNF2Q99496 336 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 GPA33Q99795 319 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 MAP1LC3CQ9BXW4 147 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 CACNA1CQ13936 2221 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 RCC1P18754 421 aaPredicted RBP15.31■□□□□ 0.04
SYNPO-201ENST00000307662 WIPI1Q5MNZ9 446 aaPredicted RBP15.31■□□□□ 0.04
SYNPO-201ENST00000307662 SRD5A3Q9H8P0 318 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 TECRQ9NZ01 308 aaKnown RBP15.31■□□□□ 0.04
SYNPO-201ENST00000307662 ZNF785A8K8V0 405 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 LMO7DNF2Z398 122 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 PPYP01298 95 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 CTGFP29279 349 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 GAPTQ8N292 157 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 MISP3Q96FF7 219 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 RCC2Q9P258 522 aaKnown RBP15.31■□□□□ 0.04
SYNPO-201ENST00000307662 TCF21O43680 179 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 CD1AP06126 327 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 PGA4P0DJD7 388 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 PGA5P0DJD9 388 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 ALKBH6Q3KRA9 238 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 LYG1Q8N1E2 194 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 VSIG8P0DPA2 414 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 FOXO1Q12778 655 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 SPNS3Q6ZMD2 512 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 KLK13Q9UKR3 277 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 DEDDO75618 318 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 CISD3P0C7P0 127 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 UBE2L3P68036 154 aaKnown RBP15.3■□□□□ 0.04
SYNPO-201ENST00000307662 VN1R17PQ8TDU5 208 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 SIRT4Q9Y6E7 314 aaPredicted RBP15.3■□□□□ 0.04
SYNPO-201ENST00000307662 NKX2-6A6NCS4 301 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 PAGE4O60829 102 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 SNCGO76070 127 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 ATP6V0CP27449 155 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 FAM3BP58499 235 aaPredicted RBP15.3■□□□□ 0.04
SYNPO-201ENST00000307662 LSM11P83369 360 aaKnown RBP eCLIP15.3■□□□□ 0.04
SYNPO-201ENST00000307662 COL5A1-AS1Q5SY13 56 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.3■□□□□ 0.04
SYNPO-201ENST00000307662 MARVELD3Q96A59 401 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 LPAR5Q9H1C0 372 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 OR51M1Q9H341 326 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 TBX15Q96SF7 602 aa15.3■□□□□ 0.04
SYNPO-201ENST00000307662 LTBP4Q8N2S1 1624 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 GNG10P50151 68 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 SMAD4Q13485 552 aaKnown RBP15.29■□□□□ 0.04
SYNPO-201ENST00000307662 A6NDN8 102 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 OR5B21A6NL26 309 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 WISP3O95389 354 aaPredicted RBP15.29■□□□□ 0.04
SYNPO-201ENST00000307662 OR3A1P47881 315 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 FZD5Q13467 585 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 TMEM255AQ5JRV8 349 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 MOB3BQ86TA1 216 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 TGIF2LXQ8IUE1 241 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 TMEM251Q8N6I4 163 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 ZNF784Q8NCA9 323 aaPredicted RBP15.29■□□□□ 0.04
SYNPO-201ENST00000307662 OR2Z1Q8NG97 314 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 PTX4Q96A99 478 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 COX14Q96I36 57 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 PITX3O75364 302 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 WFDC8Q8IUA0 241 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 MRPL30Q8TCC3 161 aaKnown RBP15.29■□□□□ 0.04
SYNPO-201ENST00000307662 DTD1Q8TEA8 209 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 KISS1RQ969F8 398 aaPredicted RBP15.29■□□□□ 0.04
SYNPO-201ENST00000307662 GNRHR2Q96P88 292 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 C16orf82Q7Z2V1 217 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 FAM219AQ8IW50 185 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 TDHQ8IZJ6 230 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 OR11G2Q8NGC1 345 aa15.29■□□□□ 0.04
SYNPO-201ENST00000307662 DLEC1Q9Y238 1755 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 IGHV3-43A0A0B4J1X8 118 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 CDK2AP1O14519 115 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 IGHV3-43DP0DP04 118 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 ANKRD37Q7Z713 158 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 DOK5Q9P104 306 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 SERGEFQ9UGK8 458 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 LOXL2Q9Y4K0 774 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 SPRY3O43610 288 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 CD160O95971 181 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 HOXA6P31267 233 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 PSG6Q00889 435 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 GGTLC2Q14390 218 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 CD226Q15762 336 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 NCBP2LA6PVI3 153 aaKnown RBP15.28■□□□□ 0.04
SYNPO-201ENST00000307662 SNURFLB1AK76 121 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 CSN3P07498 182 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 VASH2Q86V25 355 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 HOGA1Q86XE5 327 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 LINC01565O15544 149 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 IER3P46695 156 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 LRRC10Q5BKY1 277 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 OR1L3Q8NH93 324 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 SARGQ9BW04 601 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms