RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 LUMP51884 338 aaPredicted RBP11.9□□□□□ -0.5
SYNE2-228ENST00000639659 SCN1BQ07699 218 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 TRIM25Q14258 630 aaKnown RBP11.9□□□□□ -0.5
SYNE2-228ENST00000639659 RTN4RL2Q86UN3 420 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 ENTHD1Q8IYW4 607 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 FAM58AQ8N1B3 248 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 MED4Q9NPJ6 270 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 H2AFY2Q9P0M6 372 aaPredicted RBP11.9□□□□□ -0.5
SYNE2-228ENST00000639659 MRM2Q9UI43 246 aaKnown RBP11.9□□□□□ -0.5
SYNE2-228ENST00000639659 GSTK1Q9Y2Q3 226 aa11.9□□□□□ -0.5
SYNE2-228ENST00000639659 DHRS7CA6NNS2 312 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 PRKYO43930 277 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 ENTPD6O75354 484 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 DCTN3O75935 186 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 IGHV3-7P01780 117 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 SNRNP70P08621 437 aaKnown RBP11.89□□□□□ -0.51
SYNE2-228ENST00000639659 NHLRC4P0CG21 123 aaPredicted RBP11.89□□□□□ -0.51
SYNE2-228ENST00000639659 MYCNOSP40205 109 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 PTGFRP43088 359 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 GLIPR1P48060 266 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 AESQ08117 197 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 HNF4GQ14541 408 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 HLA-DRB5Q30154 266 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 Q8IYB0 196 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 ADGRG5Q8IZF4 528 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 OR4D6Q8NGJ1 314 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 OR56B4Q8NH76 319 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 TOMM40LQ969M1 308 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 RFT1Q96AA3 541 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 RPEQ96AT9 228 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 EXOSC4Q9NPD3 245 aaKnown RBP11.89□□□□□ -0.51
SYNE2-228ENST00000639659 ZMAT5Q9UDW3 170 aaKnown RBP11.89□□□□□ -0.51
SYNE2-228ENST00000639659 ARL2BPQ9Y2Y0 163 aa11.89□□□□□ -0.51
SYNE2-228ENST00000639659 TRBV2A0A0J9YWF9 115 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 BUB1B-PAK6H3BSN5 160 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 APOL3O95236 402 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 SERPINA3P01011 423 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 IGLV1-47P01700 117 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 KRT8P05787 483 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 OCM2P0CE71 109 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 OCMP0CE72 109 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-228ENST00000639659 FAM106CPP0CH98 169 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 ANXA8P13928 327 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 ZNF44P15621 663 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 TMEM11P17152 192 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 ATP1B3P54709 279 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 PRRX1P54821 245 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 SLC35B1P78383 322 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 KLHL22Q53GT1 634 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 CCDC144NLQ6NUI1 221 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 HEPN1Q6WQI6 88 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 MEPCEQ7L2J0 689 aaKnown RBP11.88□□□□□ -0.51
SYNE2-228ENST00000639659 SSX6Q7RTT6 188 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 CHPT1Q8WUD6 406 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 CANT1Q8WVQ1 401 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 CHST5Q9GZS9 411 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 ADGRL4Q9HBW9 690 aa11.88□□□□□ -0.51
SYNE2-228ENST00000639659 FUOMA2VDF0 154 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 OR2H2O95918 312 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 CCL1P22362 96 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 ERP29P30040 261 aaKnown RBP11.87□□□□□ -0.51
SYNE2-228ENST00000639659 ECI1P42126 302 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 RBP2P50120 134 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 CRISP1P54107 249 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 BNIP1Q12981 228 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 ATXN7L3Q14CW9 347 aaPredicted RBP11.87□□□□□ -0.51
SYNE2-228ENST00000639659 LTC4SQ16873 150 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 DEFB136Q30KP8 78 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 UTF1Q5T230 341 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 CATSPERDQ86XM0 798 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 ZNF695Q8IW36 515 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 ARHGAP24Q8N264 748 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 TCEANCQ8N8B7 351 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 CREB3L1Q96BA8 519 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 PRRG3Q9BZD7 231 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 NEK6Q9HC98 313 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 CLN6Q9NWW5 311 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 HHLA2Q9UM44 414 aa11.87□□□□□ -0.51
SYNE2-228ENST00000639659 LOC107986453A0A1B0GWG9 222 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 C3orf84H3BNL1 204 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 SH2D1BO14796 132 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 LY86O95711 162 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 GLP1RP43220 463 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 MTCP1P56278 107 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 KRBOX4Q5JUW0 171 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 SPIN3Q5JUX0 258 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 LCNL1Q6ZST4 164 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 SLC35E3Q7Z769 313 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 DRAM1Q8N682 238 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 OR5D18Q8NGL1 313 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 LEAP2Q969E1 77 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 ASB9Q96DX5 294 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 RAX2Q96IS3 184 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 IL4I1Q96RQ9 567 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 P2RX4Q99571 388 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 MNTQ99583 582 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 TAS2R3Q9NYW6 316 aa11.86□□□□□ -0.51
SYNE2-228ENST00000639659 ODAMA1E959 279 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 CCL24O00175 119 aa11.85□□□□□ -0.51
SYNE2-228ENST00000639659 HSPB6O14558 160 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms