RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 EMG1Q92979 244 aaKnown RBP13.05□□□□□ -0.32
CLN3-255ENST00000637100 CREB3L1Q96BA8 519 aa13.05□□□□□ -0.32
CLN3-255ENST00000637100 BORCS8Q96FH0 119 aa13.05□□□□□ -0.32
CLN3-255ENST00000637100 WWC2-AS2Q96NR7 200 aa13.05□□□□□ -0.32
CLN3-255ENST00000637100 PRRG3Q9BZD7 231 aa13.05□□□□□ -0.32
CLN3-255ENST00000637100 CHST6Q9GZX3 395 aa13.05□□□□□ -0.32
CLN3-255ENST00000637100 COMMD4Q9H0A8 199 aa13.05□□□□□ -0.32
CLN3-255ENST00000637100 HMG20AQ9NP66 347 aa13.05□□□□□ -0.32
CLN3-255ENST00000637100 RBFOX1Q9NWB1 397 aaKnown RBP13.05□□□□□ -0.32
CLN3-255ENST00000637100 METTL15A6NJ78 407 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 BUB1B-PAK6H3BSN5 160 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 KRT8P05787 483 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 OR2T7P0C7T2 308 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 CGB3P0DN86 165 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 CGB7P0DN87 165 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 GABRR1P24046 479 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 CD24P25063 80 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 SLC6A1P30531 599 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 GDNFP39905 211 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 RBP2P50120 134 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 GYS2P54840 703 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 HLA-DRB5Q30154 266 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 GID4Q8IVV7 300 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 PRSS35Q8N3Z0 413 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 GAL3ST2Q9H3Q3 398 aa13.04□□□□□ -0.32
CLN3-255ENST00000637100 H2AFY2Q9P0M6 372 aaPredicted RBP13.04□□□□□ -0.32
CLN3-255ENST00000637100 WARS2Q9UGM6 360 aaKnown RBP13.04□□□□□ -0.32
CLN3-255ENST00000637100 SERPINA3P01011 423 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 CDK2P24941 298 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 DUSP1P28562 367 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 THBS3P49746 956 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 ATP1B3P54709 279 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 DEFB121Q5J5C9 76 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 TPTE2P1Q5T6R2 138 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 YIPF7Q8N8F6 280 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 STMN2Q93045 179 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 THTPAQ9BU02 230 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 LINC00574Q9H8X3 128 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 PLEKHA1Q9HB21 404 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 RHOFQ9HBH0 211 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 ZNF286AQ9HBT8 521 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 PCDHGB5Q9Y5G0 923 aa13.03□□□□□ -0.32
CLN3-255ENST00000637100 TRGV10A0A0A0MS01 117 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 IGKV1-12A0A0C4DH73 117 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 A0A1W2PQL4 384 aaPredicted RBP13.02□□□□□ -0.33
CLN3-255ENST00000637100 FUOMA2VDF0 154 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 E9PQ18 207 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 M0R129 80 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 RPP14O95059 124 aaKnown RBP13.02□□□□□ -0.33
CLN3-255ENST00000637100 CLIC3O95833 236 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 OR2H2O95918 312 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 IGKV1D-12P01611 117 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 MT-ND2P03891 347 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 VSIG8P0DPA2 414 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 BCL3P20749 454 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 CEACAM3P40198 252 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 KIR3DL2P43630 455 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 ARHGDIBP52566 201 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 PDZK1IP1Q13113 114 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 C17orf58Q2M2W7 97 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 PRAMEF5Q5TYX0 476 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 KDM4DQ6B0I6 523 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 ADAT3Q96EY9 351 aaPredicted RBP13.02□□□□□ -0.33
CLN3-255ENST00000637100 P2RX4Q99571 388 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 MCRIP2Q9BUT9 160 aaKnown RBP13.02□□□□□ -0.33
CLN3-255ENST00000637100 NCOR1P1Q9H4R4 102 aa13.02□□□□□ -0.33
CLN3-255ENST00000637100 LOC107986453A0A1B0GWG9 222 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 SH2D1BO14796 132 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 MITFO75030 526 aaPredicted RBP13.01□□□□□ -0.33
CLN3-255ENST00000637100 KDM4BO94953 1096 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 ISG15P05161 165 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 UBCP0CG48 685 aaKnown RBP13.01□□□□□ -0.33
CLN3-255ENST00000637100 PRKACBP22694 351 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 HTR1FP30939 366 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 HOXD3P31249 432 aaPredicted RBP13.01□□□□□ -0.33
CLN3-255ENST00000637100 GLIPR1P48060 266 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 TMED1Q13445 227 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 DCTN2Q13561 401 aaKnown RBP13.01□□□□□ -0.33
CLN3-255ENST00000637100 FLOT2Q14254 428 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 CCDC144NLQ6NUI1 221 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 Q6P435 159 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 FDX2Q6P4F2 183 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 COQ2Q96H96 371 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 MBOAT4Q96T53 435 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 ZFP57Q9NU63 452 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 GLS2Q9UI32 602 aa13.01□□□□□ -0.33
CLN3-255ENST00000637100 ODAMA1E959 279 aa13□□□□□ -0.33
CLN3-255ENST00000637100 INMTO95050 263 aa13□□□□□ -0.33
CLN3-255ENST00000637100 FAM107AO95990 144 aa13□□□□□ -0.33
CLN3-255ENST00000637100 PRKACAP17612 351 aa13□□□□□ -0.33
CLN3-255ENST00000637100 ATF1P18846 271 aa13□□□□□ -0.33
CLN3-255ENST00000637100 MYCNOSP40205 109 aa13□□□□□ -0.33
CLN3-255ENST00000637100 MTCP1P56278 107 aa13□□□□□ -0.33
CLN3-255ENST00000637100 RPL23AP62750 156 aaKnown RBP13□□□□□ -0.33
CLN3-255ENST00000637100 ODF4Q2M2E3 257 aa13□□□□□ -0.33
CLN3-255ENST00000637100 UTF1Q5T230 341 aa13□□□□□ -0.33
CLN3-255ENST00000637100 LHFPL2Q6ZUX7 228 aa13□□□□□ -0.33
CLN3-255ENST00000637100 TRAPPC6BQ86SZ2 158 aa13□□□□□ -0.33
CLN3-255ENST00000637100 SPATA24Q86W54 205 aa13□□□□□ -0.33
CLN3-255ENST00000637100 SAXO1Q8IYX7 474 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms