RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 GLAP06280 429 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 GLRA1P23415 457 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 FAUP35544 74 aaKnown RBP15.53■□□□□ 0.08
CLN3-254ENST00000637050 GMFBP60983 142 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 SWI5Q1ZZU3 235 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 FAM209AQ5JX71 171 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 STEAP1BQ6NZ63 245 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 OR4S1Q8NGB4 309 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 OR4C16Q8NGL9 310 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 CMSS1Q9BQ75 279 aaKnown RBP15.53■□□□□ 0.08
CLN3-254ENST00000637050 MS4A5Q9H3V2 200 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 NLKQ9UBE8 527 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 TRAV24A0A0B4J272 114 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 UBE2QL1A1L167 161 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 LHBP01229 141 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 TESK1Q15569 626 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 FAAP20Q6NZ36 180 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 GLCCI1Q86VQ1 547 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 HOGA1Q86XE5 327 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 ZCCHC24Q8N2G6 241 aaKnown RBP15.52■□□□□ 0.08
CLN3-254ENST00000637050 MUC15Q8N387 334 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 GCSAMQ8N6F7 178 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 SUMF2Q8NBJ7 301 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 OR4D10Q8NGI6 311 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 Q8TCH9 128 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 SNAPC3Q92966 411 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 HDHD3Q9BSH5 251 aaPredicted RBP15.52■□□□□ 0.08
CLN3-254ENST00000637050 TMEM165Q9HC07 324 aa15.52■□□□□ 0.08
CLN3-254ENST00000637050 CHD3Q12873 2000 aaKnown RBP15.52■□□□□ 0.07
CLN3-254ENST00000637050 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.51■□□□□ 0.07
CLN3-254ENST00000637050 SH2D1BO14796 132 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 DEGS1O15121 323 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 OR2H2O95918 312 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 KNG1P01042 644 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 EGR1P18146 543 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 TNFRSF1AP19438 455 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 DTYMKP23919 212 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 GIFP27352 417 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 HLA-DMAP28067 261 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 CCL8P80075 99 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 HOXA4Q00056 320 aaPredicted RBP15.51■□□□□ 0.07
CLN3-254ENST00000637050 SMIM21Q3B7S5 101 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 OR52W1Q6IF63 320 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 DYRK2Q92630 601 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 CACNG6Q9BXT2 260 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 MMP28Q9H239 520 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 DPAGT1Q9H3H5 408 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 DYNLRB1Q9NP97 96 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 MCRIP1C9JLW8 97 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 RAB3DO95716 219 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 RNF224P0DH78 156 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 ZNF44P15621 663 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 TBPP20226 339 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 MRPS15P82914 257 aaKnown RBP15.51■□□□□ 0.07
CLN3-254ENST00000637050 PLET1Q6UQ28 207 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 FAM90A1Q86YD7 464 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 ST6GALNAC5Q9BVH7 336 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 DPCDQ9BVM2 203 aaPredicted RBP15.51■□□□□ 0.07
CLN3-254ENST00000637050 CHST6Q9GZX3 395 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 MCUBQ9NWR8 336 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 COPZ2Q9P299 210 aa15.51■□□□□ 0.07
CLN3-254ENST00000637050 ZNF230Q9UIE0 474 aaPredicted RBP15.51■□□□□ 0.07
CLN3-254ENST00000637050 HS3ST1O14792 307 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 HAND1O96004 215 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 HNRNPCP07910 306 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLN3-254ENST00000637050 FCGR3AP08637 254 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 RBMXP38159 391 aaKnown RBP15.5■□□□□ 0.07
CLN3-254ENST00000637050 CCR6P51684 374 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 SFRP4Q6FHJ7 346 aaPredicted RBP15.5■□□□□ 0.07
CLN3-254ENST00000637050 RDH5Q92781 318 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 TINAGL1Q9GZM7 467 aaPredicted RBP15.5■□□□□ 0.07
CLN3-254ENST00000637050 EGLN1Q9GZT9 426 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 C12orf4Q9NQ89 552 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 RNF7Q9UBF6 113 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 GLS2Q9UI32 602 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 PPP1R3CQ9UQK1 317 aa15.5■□□□□ 0.07
CLN3-254ENST00000637050 hCG_2014768A0A024R1R8 64 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 M0QYG6 137 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 SLC33A1O00400 549 aaPredicted RBP15.49■□□□□ 0.07
CLN3-254ENST00000637050 TCRBP04435 133 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 LMO1P25800 156 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 RBM39Q14498 530 aaKnown RBP15.49■□□□□ 0.07
CLN3-254ENST00000637050 MEF2DQ14814 521 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 BEST4Q8NFU0 473 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 OR11L1Q8NGX0 322 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 OR4K15Q8NH41 348 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 OR56B4Q8NH76 319 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 MARVELD1Q9BSK0 173 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 SEBOXQ9HB31 216 aaPredicted RBP15.49■□□□□ 0.07
CLN3-254ENST00000637050 DECR2Q9NUI1 292 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 ZNF701Q9NV72 531 aaPredicted RBP15.49■□□□□ 0.07
CLN3-254ENST00000637050 FAIMQ9NVQ4 179 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 EDARQ9UNE0 448 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 KLF2Q9Y5W3 355 aaPredicted RBP15.49■□□□□ 0.07
CLN3-254ENST00000637050 NPTNQ9Y639 398 aa15.49■□□□□ 0.07
CLN3-254ENST00000637050 KMT2BQ9UMN6 2715 aaPredicted RBP15.49■□□□□ 0.07
CLN3-254ENST00000637050 PYCARD-AS1I3L0S3 204 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 SIRPB1O00241 398 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 HSPB6O14558 160 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 NAPSAO96009 420 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms