RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 A0A096LNT2 108 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 IGKV3D-11A0A0A0MRZ8 115 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 IGHV3-74A0A0B4J1X5 117 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 TRAV17A0A0B4J275 112 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 SLC5A10A0PJK1 596 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM223A0PJW6 202 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 BICDL2A1A5D9 508 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 MGAT4DA6NG13 374 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 DEFB108AA8MXU0 73 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 C2orf74A8MZ97 194 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 GPR89AB7ZAQ6 455 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 C21orf140B9A014 251 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ATP6V1G2-DDX39BF2Z307 99 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 H0YHG0 523 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CDC7O00311 574 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ZW10O43264 779 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ERI3O43414 337 aaKnown RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 SPOPO43791 374 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 FCMRO60667 390 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CST8O60676 142 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 UPK3AO75631 287 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CTAG2O75638 210 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 EIF3GO75821 320 aaKnown RBP eCLIP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 LYZL6O75951 148 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 OR2J2O76002 312 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 AQP8O94778 261 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 PROSCO94903 275 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ETHE1O95571 254 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 AIFM1O95831 613 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 TSPAN12O95859 305 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 TGM6O95932 706 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 IGHV2-5P01817 119 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 IGHG4P01861 327 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 FGGP02679 453 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 TFF1P04155 84 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 KRT8P05787 483 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 SOD3P08294 240 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ANXA5P08758 320 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 GNAO1P09471 354 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 LINC00869P0C866 280 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 GPR89BP0CG08 455 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 IGHV1-8P0DP01 117 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 RAB3BP20337 219 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 KDELR1P24390 212 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 HRH1P35367 487 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CEACAM3P40198 252 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 NPBWR2P48146 333 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CCT3P49368 545 aaKnown RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CEBPDP49716 269 aaPredicted RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 EMP2P54851 167 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ATP5J2P56134 94 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 FBXW4P57775 412 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 OR4D2P58180 307 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 EIF3EP60228 445 aaKnown RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ERVS71-1P61550 626 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 KCNJ2P63252 427 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ELF3P78545 371 aaPredicted RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 REEP5Q00765 189 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF92Q03936 586 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 PPIDQ08752 370 aaKnown RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 C2orf54Q08AI8 447 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 SYCNQ0VAF6 134 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 KLRD1Q13241 179 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 MAD2L1BPQ15013 274 aaPredicted RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 PAFAH1B3Q15102 231 aaKnown RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ZMYND11Q15326 602 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 PRSS8Q16651 343 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CHRFAM7AQ494W8 412 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 KCTD21Q4G0X4 260 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 SPRNQ5BIV9 151 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM255AQ5JRV8 349 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CCDC122Q5T0U0 273 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 THEM4Q5T1C6 240 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 C6orf52Q5T4I8 152 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 AVPI1Q5T686 147 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 METTL21CQ5VZV1 264 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 Q5W150 140 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 AP1ARQ63HQ0 302 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 SAXO2Q658L1 398 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ANKRD26P1Q6NSI1 321 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ARL9Q6T311 187 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 PLET1Q6UQ28 207 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 SCIMPQ6UWF3 145 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 LYPD2Q6UXB3 125 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ANGPTL8Q6UXH0 198 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 NPSR1Q6W5P4 371 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 BRD3OSQ6XYD6 125 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 SPNS3Q6ZMD2 512 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 Q6ZR03 302 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 HDDC2Q7Z4H3 204 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 LHFPL3Q86UP9 236 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 PHF13Q86YI8 300 aaPredicted RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 WDFY1Q8IWB7 410 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CA13Q8N1Q1 262 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 ZCCHC24Q8N2G6 241 aaKnown RBP0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 UBE2J2Q8N2K1 259 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 LIX1Q8N485 282 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 CNEP1R1Q8N9A8 125 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 HSD17B11Q8NBQ5 300 aa0.61□□□□□ -2.31
SMARCB1-209ENST00000635578 APCDD1LQ8NCL9 501 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms