RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PLEKHF2Q9H8W4 249 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 NECAP2Q9NVZ3 263 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 ANXA10Q9UJ72 324 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 NPIPA1Q9UND3 350 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 MMACHCQ9Y4U1 282 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 GPR179Q6PRD1 2367 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 ALPK2Q86TB3 2170 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 TMED7-TICAM2A0A0A6YYA0 188 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 A0A1W2PP11 408 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 PATE3B3GLJ2 98 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 STMND1H3BQB6 276 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 RAB11AP62491 216 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 BAXQ07812 192 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 CMTM1Q8IZ96 169 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 SLC38A9Q8NBW4 561 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 OR4D5Q8NGN0 318 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 ASB10Q8WXI3 467 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 BMFQ96LC9 184 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 P2RX4Q99571 388 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 STARD5Q9NSY2 213 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 CISD1Q9NZ45 108 aaKnown RBP9.44□□□□□ -0.9
UPF3A-212ENST00000619079 HS3ST3A1Q9Y663 406 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 FREM3P0C091 2139 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 ARID1AO14497 2285 aa9.44□□□□□ -0.9
UPF3A-212ENST00000619079 WDR87Q6ZQQ6 2873 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 SPAG17Q6Q759 2223 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 TOX3O15405 576 aaPredicted RBP9.43□□□□□ -0.9
UPF3A-212ENST00000619079 COL10A1Q03692 680 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 FMODQ06828 376 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 C1orf194Q5T5A4 169 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 FAM90A2PQ658T7 463 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 DOK3Q7L591 496 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 H1FOOQ8IZA3 346 aaPredicted RBP9.43□□□□□ -0.9
UPF3A-212ENST00000619079 SUMF1Q8NBK3 374 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 OR52M1Q8NGK5 317 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 OR10J5Q8NHC4 309 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 SSC4DQ8WTU2 575 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 DNAJA3Q96EY1 480 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 HIST1H2AAQ96QV6 131 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 KCNK17Q96T54 332 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 SPIN2AQ99865 258 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 SPIN2BQ9BPZ2 258 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 PYGO2Q9BRQ0 406 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 SDF2L1Q9HCN8 221 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 FSCN3Q9NQT6 498 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 SLC7A11Q9UPY5 501 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 TRBV23OR9-2A0A075B6M9 112 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 KIR2DL5BA0A0G2JN68 375 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 KIR2DL5BA0A0G2JPC4 375 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 FRG2CA6NGY1 282 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 DHRS7CA6NNS2 312 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 CST2P09228 141 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 CCL1P22362 96 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 HSD17B7P56937 341 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 FAM3BP58499 235 aaPredicted RBP9.43□□□□□ -0.9
UPF3A-212ENST00000619079 HSF1Q00613 529 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 NHLH1Q02575 133 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 ZP4Q12836 540 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 FOXF1Q12946 379 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 ACOT6Q3I5F7 207 aaPredicted RBP9.43□□□□□ -0.9
UPF3A-212ENST00000619079 SP6Q3SY56 376 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 OGFOD3Q6PK18 319 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 RD3Q7Z3Z2 195 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 ZNF573Q86YE8 665 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 THNSL2Q86YJ6 484 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 KIR2DL5AQ8N109 375 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 CCDC71LQ8N9Z2 235 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 TSLPQ969D9 159 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 ABHD14AQ9BUJ0 271 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 VN1R1Q9GZP7 353 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 LYRM2Q9NU23 88 aaPredicted RBP9.43□□□□□ -0.9
UPF3A-212ENST00000619079 LRFN1Q9P244 771 aa9.43□□□□□ -0.9
UPF3A-212ENST00000619079 A0A1W2PQD3 144 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 HCRTR1O43613 425 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 CLPSP04118 112 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 MTCP1P56278 107 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 YPEL5P62699 121 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 HERPUD1Q15011 391 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 RNF144BQ7Z419 303 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 GRINAQ7Z429 371 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 MRPL41Q8IXM3 137 aaKnown RBP9.42□□□□□ -0.9
UPF3A-212ENST00000619079 TOMM40LQ969M1 308 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 MSI2Q96DH6 328 aaKnown RBP9.42□□□□□ -0.9
UPF3A-212ENST00000619079 ADOQ96SZ5 270 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 OPN3Q9H1Y3 402 aaPredicted RBP9.42□□□□□ -0.9
UPF3A-212ENST00000619079 CBLN4Q9NTU7 201 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 CPAMD8Q8IZJ3 1885 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 DOCK9Q9BZ29 2069 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 A6NCN8 305 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 C10orf142B7Z368 130 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 ETV2O00321 342 aaPredicted RBP9.42□□□□□ -0.9
UPF3A-212ENST00000619079 TP53I11O14683 189 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 DBHP09172 617 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 TMEM225BP0DP42 221 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 BCL2P10415 239 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 FGF5P12034 268 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 MMP9P14780 707 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 OR3A1P47881 315 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 VAMP2P63027 116 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 NFATC4Q14934 902 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms