RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 NXF2Q9GZY0 626 aaKnown RBP12.14□□□□□ -0.47
CIITA-213ENST00000618327 ANKRD20A5PA0PJZ0 165 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 LYPD3O95274 346 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 CD37P11049 281 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 HLXQ14774 488 aaPredicted RBP12.13□□□□□ -0.47
CIITA-213ENST00000618327 TMEM128Q5BJH2 165 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 LRRTM1Q86UE6 522 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 GALMQ96C23 342 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 CXXC4Q9H2H0 198 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 IFT22Q9H7X7 185 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 GSTZ1O43708 216 aaPredicted RBP12.13□□□□□ -0.47
CIITA-213ENST00000618327 HOXD4P09016 255 aaPredicted RBP12.13□□□□□ -0.47
CIITA-213ENST00000618327 CELA3AP09093 270 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 MICBQ29980 383 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 KCNIP2Q9NS61 270 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 MED9Q9NWA0 146 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 PRSS50Q9UI38 385 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 SOCS1O15524 211 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 IL5P05113 134 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 VSIG8P0DPA2 414 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 SPINK2P20155 84 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 GPR12P47775 334 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 SLC25A53Q5H9E4 307 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 TMEM182Q6ZP80 229 aaPredicted RBP12.13□□□□□ -0.47
CIITA-213ENST00000618327 WNT2BQ93097 391 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 TIMP4Q99727 224 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 PLXNA2O75051 1894 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 ZNF727A8MUV8 499 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 HAGHQ16775 308 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 FAM74A1Q5RGS3 127 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 GLDNQ6ZMI3 551 aaPredicted RBP12.13□□□□□ -0.47
CIITA-213ENST00000618327 FAM185AQ8N0U4 392 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 GVQW1Q8N7I0 195 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 SLC25A40Q8TBP6 338 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 LRRC29Q8WV35 223 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 TAAR3PQ9P1P4 343 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 AK3Q9UIJ7 227 aa12.13□□□□□ -0.47
CIITA-213ENST00000618327 PHOX2AO14813 284 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 TGOLN2O43493 480 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 NGFP01138 241 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 TNFAIP6P98066 277 aaPredicted RBP12.12□□□□□ -0.47
CIITA-213ENST00000618327 P2RY6Q15077 328 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 ZNF79Q15937 498 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 OR8G2PQ6IF36 304 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 TEX261Q6UWH6 196 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 SMIM15Q7Z3B0 74 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 LRRC75AQ8NAA5 344 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 ANGPTL6Q8NI99 470 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 CABLES2Q9BTV7 478 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 TINAGQ9UJW2 476 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 U3KQ87 197 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 H0Y8G0 127 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 FSTP19883 344 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 RSPO4Q2I0M5 234 aaPredicted RBP12.12□□□□□ -0.47
CIITA-213ENST00000618327 TMEM268Q5VZI3 342 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 GNPNAT1Q96EK6 184 aaPredicted RBP12.12□□□□□ -0.47
CIITA-213ENST00000618327 PECRQ9BY49 303 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 PCDHGA9Q9Y5G4 932 aaKnown RBP12.12□□□□□ -0.47
CIITA-213ENST00000618327 NXPH3O95157 252 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 CALCRP30988 508 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 SUCLG1P53597 346 aaKnown RBP12.12□□□□□ -0.47
CIITA-213ENST00000618327 RAG2P55895 527 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 ENDOGQ14249 297 aaKnown RBP12.12□□□□□ -0.47
CIITA-213ENST00000618327 CLEC9AQ6UXN8 241 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 ZDHHC22Q8N966 263 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 EDARADDQ8WWZ3 215 aa12.12□□□□□ -0.47
CIITA-213ENST00000618327 GAR1Q9NY12 217 aaKnown RBP12.12□□□□□ -0.47
CIITA-213ENST00000618327 BTBD17A6NE02 478 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 C16orf97H3BN30 126 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 ISG15P05161 165 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 ELLP55199 621 aaPredicted RBP12.11□□□□□ -0.47
CIITA-213ENST00000618327 LGALS4P56470 323 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 H3F3AP84243 136 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 MOB1BQ7L9L4 216 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 TMEM123Q8N131 208 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 OR10AD1Q8NGE0 317 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 ZNF331Q9NQX6 463 aaPredicted RBP12.11□□□□□ -0.47
CIITA-213ENST00000618327 MED12Q93074 2177 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 EFNB2P52799 333 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 CLLU1Q5K131 121 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 C10orf128Q5T292 105 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 H2BFWTQ7Z2G1 175 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 OR5A2Q8NGI9 324 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 MARVELD1Q9BSK0 173 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 STARD10Q9Y365 291 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 CYB5BO43169 146 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 FPR2P25090 351 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 SLC6A1P30531 599 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 HOXD11P31277 338 aaPredicted RBP12.11□□□□□ -0.47
CIITA-213ENST00000618327 WDR89Q96FK6 387 aaPredicted RBP12.11□□□□□ -0.47
CIITA-213ENST00000618327 OPN3Q9H1Y3 402 aaPredicted RBP12.11□□□□□ -0.47
CIITA-213ENST00000618327 RNF150Q9ULK6 438 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 HOXA1P49639 335 aaPredicted RBP12.11□□□□□ -0.47
CIITA-213ENST00000618327 OR2B11Q5JQS5 317 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 SLC38A6Q8IZM9 456 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 UBALD1Q8TB05 177 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 TMEM18Q96B42 140 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 OR2J1Q9GZK6 312 aa12.11□□□□□ -0.47
CIITA-213ENST00000618327 LIN7CQ9NUP9 197 aaKnown RBP12.11□□□□□ -0.47
CIITA-213ENST00000618327 HELZP42694 1942 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms