RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 KPTNQ9Y664 436 aa12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 SHANK1Q9Y566 2161 aa12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 C19orf67A6NJJ6 358 aa12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 ZNF727A8MUV8 499 aa12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 IGHEP01854 428 aa12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 RAB5CP51148 216 aa12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 KISS1Q15726 138 aa12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 PNLDC1Q8NA58 520 aaKnown RBP12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 OR4K15Q8NH41 348 aa12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 PLA2G2EQ9NZK7 142 aa12.61□□□□□ -0.39
SHROOM1-208ENST00000617339 IGHV2-5P01817 119 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 SRSF4Q08170 494 aaKnown RBP12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 UBE2V2Q15819 145 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 DCAF10Q5QP82 559 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 ANKRD11Q6UB99 2663 aaPredicted RBP12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 AKAP13Q12802 2813 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 IGKV1-9A0A0C4DH69 117 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 SERPINA7P05543 415 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 FCGR3AP08637 254 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 NR2C1P13056 603 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 PLP2Q04941 152 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 ZNF529Q6P280 563 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 CCDC54Q8NEL0 328 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 IFNA17P01571 189 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 CD5P06127 495 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 SSTP61278 116 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 RAC1P63000 192 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 NAAAQ02083 359 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 SSBP1Q04837 148 aaKnown RBP12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 ZNF124Q15973 351 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 CLEC18BQ6UXF7 455 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 FADS6Q8N9I5 356 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 ZIC4Q8N9L1 334 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 SMIM8Q96KF7 97 aa12.6□□□□□ -0.39
SHROOM1-208ENST00000617339 SLC34A2O95436 690 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 IL2RAP01589 272 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 MELTFP08582 738 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 TDGF1P13385 188 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 AMY2BP19961 511 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 FXYD4P59646 89 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 EIF5AL1Q6IS14 154 aaKnown RBP12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 TUSC5Q8IXB3 177 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 TOMM40LQ969M1 308 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 NELFAQ9H3P2 528 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 TREM2Q9NZC2 230 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 PPIHO43447 177 aaKnown RBP12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 SRSF10O75494 262 aaKnown RBP12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 OR2C1O95371 312 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 IGHMP01871 453 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 ZNF17P17021 662 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 CYCSP99999 105 aaKnown RBP12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 GUK1Q16774 197 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 ANKRD55Q3KP44 614 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 SPATA46Q5T0L3 261 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 GFI1BQ5VTD9 330 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 PRSS54Q6PEW0 395 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 CSNK2A3Q8NEV1 391 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 LYZL4Q96KX0 146 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 GFOD1Q9NXC2 390 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 RAB22AQ9UL26 194 aa12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 RBM7Q9Y580 266 aaKnown RBP12.59□□□□□ -0.39
SHROOM1-208ENST00000617339 IGFBP3P17936 291 aaPredicted RBP12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 RSU1Q15404 277 aa12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 TSPO2Q5TGU0 170 aa12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 HIST2H3AQ71DI3 136 aa12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 RNASE11Q8TAA1 199 aaKnown RBP12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 SAT2Q96F10 170 aaPredicted RBP12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 C14orf144Q96I85 54 aa12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 HIST1H2AAQ96QV6 131 aa12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 SLC5A7Q9GZV3 580 aa12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 SLCO5A1Q9H2Y9 848 aa12.58□□□□□ -0.39
SHROOM1-208ENST00000617339 CD59P13987 128 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 CAMLGP49069 296 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 ENDOGQ14249 297 aaKnown RBP12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 SLC10A1Q14973 349 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 PCK2Q16822 640 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 ZNF343Q6P1L6 599 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 BTNL8Q6UX41 500 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 M1APQ8TC57 530 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 EGLN1Q9GZT9 426 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 PLEKHJ1Q9NW61 149 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 FBXL17Q9UF56 701 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 TIMM10BQ9Y5J6 103 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 KLRC4-KLRK1H3BQV0 150 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 TMEM127O75204 238 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 RAD51DO75771 328 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 GLRA1P23415 457 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 GAMTQ14353 236 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 SURF2Q15527 256 aaPredicted RBP12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 PLAC9Q5JTB6 97 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 FDX2Q6P4F2 183 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 OR5AS1Q8N127 324 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 ZDHHC22Q8N966 263 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 LURAP1Q96LR2 239 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 MYOZ1Q9NP98 299 aaPredicted RBP12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 ZNF71Q9NQZ8 489 aaPredicted RBP12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 PARPBPQ9NWS1 579 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 GAR1Q9NY12 217 aaKnown RBP12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 SLC2A8Q9NY64 477 aa12.58□□□□□ -0.4
SHROOM1-208ENST00000617339 ZGRF1Q86YA3 2104 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms