RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 CSMD3Q7Z407 3707 aa4.81□□□□□ -1.64
VRK3-220ENST00000600259 IGKV1-12A0A0C4DH73 117 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 TRBV2A0A0J9YWF9 115 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 A0A1W2PPI3 338 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 FAM172BPA6NC97 362 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CCL24O00175 119 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 PRKYO43930 277 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CST1P01037 141 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 IGKV1D-12P01611 117 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 IGHG2P01859 326 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CALCBP10092 127 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 BCL3P20749 454 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 GABRR1P24046 479 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CRISP1P54107 249 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CXCR4P61073 352 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 RPS7P62081 194 aaKnown RBP4.8□□□□□ -1.64
VRK3-220ENST00000600259 ESRRGP62508 458 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 AESQ08117 197 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 EBI3Q14213 229 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 DIAPH2-AS1Q14236 149 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 KIR2DS1Q14954 304 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 SNAPC1Q16533 368 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 KIAA2026Q5HYC2 2103 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 KHDC1LQ5JSQ8 128 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 C9orf152Q5JTZ5 239 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 BCL2L15Q5TBC7 163 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 SLX4IPQ5VYV7 408 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 Q6P435 159 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 C16orf89Q6UX73 402 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 UNQ9370/PRO34162Q6UXP9 181 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 MEPCEQ7L2J0 689 aaKnown RBP4.8□□□□□ -1.64
VRK3-220ENST00000600259 DHFR2Q86XF0 187 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CATSPERDQ86XM0 798 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 ZNF695Q8IW36 515 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 ENTHD1Q8IYW4 607 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 FAM58AQ8N1B3 248 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 C5orf56Q8N8D9 126 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 RNF152Q8N8N0 203 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 DNAAF1Q8NEP3 725 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 OR51D1Q8NGF3 324 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CHPT1Q8WUD6 406 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CANT1Q8WVQ1 401 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CAPSLQ8WWF8 208 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 DPF1Q92782 380 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 EMG1Q92979 244 aaKnown RBP4.8□□□□□ -1.64
VRK3-220ENST00000600259 PRR25Q96S07 402 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 CHST5Q9GZS9 411 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 DCLRE1BQ9H816 532 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 MOB1AQ9H8S9 216 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 LINC00574Q9H8X3 128 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 ADGRL4Q9HBW9 690 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 HMG20AQ9NP66 347 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 ARGLU1Q9NWB6 273 aaPredicted RBP4.8□□□□□ -1.64
VRK3-220ENST00000600259 GAR1Q9NY12 217 aaKnown RBP4.8□□□□□ -1.64
VRK3-220ENST00000600259 TVP23BQ9NYZ1 205 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 ZMAT5Q9UDW3 170 aaKnown RBP4.8□□□□□ -1.64
VRK3-220ENST00000600259 LINC00527Q9UJ94 153 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 IKZF2Q9UKS7 526 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.8□□□□□ -1.64
VRK3-220ENST00000600259 SLC7A11Q9UPY5 501 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 MOB4Q9Y3A3 225 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 PCDHGB5Q9Y5G0 923 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 SNX5Q9Y5X3 404 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 HSPE1-MOB4S4R3N1 261 aa4.8□□□□□ -1.64
VRK3-220ENST00000600259 TRGV10A0A0A0MS01 117 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 ODAMA1E959 279 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 B2RBV5 119 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 H3BSH0 61 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 FGF16O43320 207 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 OR2H2O95918 312 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 CSN2P05814 226 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 FAM106CPP0CH98 169 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 T-ENOLP0DO92 83 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 ANXA8P13928 327 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 CHATP28329 748 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 EPHA2P29317 976 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 CEACAM3P40198 252 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 KIR3DL2P43630 455 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 CDX1P47902 265 aaPredicted RBP4.79□□□□□ -1.64
VRK3-220ENST00000600259 RBP2P50120 134 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 DAPP51397 102 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 LUMP51884 338 aaPredicted RBP4.79□□□□□ -1.64
VRK3-220ENST00000600259 PRRX1P54821 245 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 CDC42P60953 191 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 ISL1P61371 349 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 PDZK1IP1Q13113 114 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 KIAA0141Q14154 515 aaPredicted RBP4.79□□□□□ -1.64
VRK3-220ENST00000600259 PTGES3Q15185 160 aaKnown RBP4.79□□□□□ -1.64
VRK3-220ENST00000600259 C4orf48Q5BLP8 95 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 FAHD1Q6P587 224 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 SLC35F2Q8IXU6 374 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 Q8IYB0 196 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 RDH10Q8IZV5 341 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 ARHGAP24Q8N264 748 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 PRSS35Q8N3Z0 413 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 STPG2Q8N412 459 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 COMMD1Q8N668 190 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 Q8N6K4 173 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 KLHL30-AS1Q8NEE0 82 aa4.79□□□□□ -1.64
VRK3-220ENST00000600259 MUC7Q8TAX7 377 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms