RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SLC16A12Q6ZSM3 486 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 PRSS41Q7RTY9 318 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 ZNF547Q8IVP9 402 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 ARHGAP5-AS1Q96IT6 56 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 PCBP3P57721 371 aaKnown RBP18.03■□□□□ 0.48
UPF1-207ENST00000599848 LSM11P83369 360 aaKnown RBP eCLIP18.03■□□□□ 0.48
UPF1-207ENST00000599848 TEX50A0A1B0GTY4 177 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 TCRBV5S2A0A599 114 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 OR4C16Q8NGL9 310 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 OR13C5Q8NGS8 318 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 GPR137Q96N19 417 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 CORTO00230 105 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 CD96P40200 585 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 GNG4P50150 75 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 TUSC1Q2TAM9 212 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 RBPMSQ93062 196 aaKnown RBP18.03■□□□□ 0.48
UPF1-207ENST00000599848 PLPPR2Q96GM1 343 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 HARBI1Q96MB7 349 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 GDF15Q99988 308 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 GSX2Q9BZM3 304 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 DEFA6Q01524 100 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 GAMTQ14353 236 aa18.03■□□□□ 0.48
UPF1-207ENST00000599848 RP1L1Q8IWN7 2480 aaPredicted RBP18.03■□□□□ 0.48
UPF1-207ENST00000599848 RPS4Y1P22090 263 aaKnown RBP18.02■□□□□ 0.48
UPF1-207ENST00000599848 RAE1P78406 368 aaKnown RBP18.02■□□□□ 0.48
UPF1-207ENST00000599848 ATG4DQ86TL0 474 aaPredicted RBP18.02■□□□□ 0.48
UPF1-207ENST00000599848 TMED6Q8WW62 240 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 EID2BQ96D98 161 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 CCL19Q99731 98 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 DOCK1Q14185 1865 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 IGHV3-43A0A0B4J1X8 118 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 PF4P02776 101 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 IGHV3-43DP0DP04 118 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 FAM181AQ8N9Y4 354 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 ZNF501Q96CX3 271 aaPredicted RBP18.02■□□□□ 0.48
UPF1-207ENST00000599848 ZNF714Q96N38 554 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 H3BMH7 237 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 IGHV4-34P06331 123 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 PPP1CCP36873 323 aaKnown RBP18.02■□□□□ 0.48
UPF1-207ENST00000599848 MRGPRGQ86SM5 289 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 LSMEM1Q8N8F7 131 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 SLC25A22Q9H936 323 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 VSIG4Q9Y279 399 aa18.02■□□□□ 0.48
UPF1-207ENST00000599848 F5P12259 2224 aa18.02■□□□□ 0.47
UPF1-207ENST00000599848 HAX1O00165 279 aa18.02■□□□□ 0.47
UPF1-207ENST00000599848 RANP62826 216 aaKnown RBP18.02■□□□□ 0.47
UPF1-207ENST00000599848 CHODLQ9H9P2 273 aa18.02■□□□□ 0.47
UPF1-207ENST00000599848 POMT1Q9Y6A1 747 aa18.02■□□□□ 0.47
UPF1-207ENST00000599848 A0A1W2PQF6 199 aa18.02■□□□□ 0.47
UPF1-207ENST00000599848 PLPP2O43688 288 aa18.02■□□□□ 0.47
UPF1-207ENST00000599848 SSX1Q16384 188 aa18.02■□□□□ 0.47
UPF1-207ENST00000599848 ECSCRQ19T08 205 aa18.02■□□□□ 0.47
UPF1-207ENST00000599848 CACNG5Q9UF02 275 aa18.02■□□□□ 0.47
UPF1-207ENST00000599848 LOXHD1Q8IVV2 1947 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 PRR19A6NJB7 356 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 ACAA1P09110 424 aaPredicted RBP18.01■□□□□ 0.47
UPF1-207ENST00000599848 HOXB3P14651 431 aaPredicted RBP18.01■□□□□ 0.47
UPF1-207ENST00000599848 CDC34P49427 236 aaPredicted RBP18.01■□□□□ 0.47
UPF1-207ENST00000599848 SH2D5Q6ZV89 423 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 MYPOPQ86VE0 399 aaPredicted RBP18.01■□□□□ 0.47
UPF1-207ENST00000599848 ZNF683Q8IZ20 524 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 RXFP4Q8TDU9 374 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 MGST3O14880 152 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 ARG1P05089 322 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 ORM2P19652 201 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 RSPO4Q2I0M5 234 aaPredicted RBP18.01■□□□□ 0.47
UPF1-207ENST00000599848 FAM106AQ4KMX7 169 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 DNASE2BQ8WZ79 361 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 TMEM18Q96B42 140 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 CDIPTO14735 213 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 SFT2D2O95562 160 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 FAM87AP0C7U9 286 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 UBE2L3P68036 154 aaKnown RBP18.01■□□□□ 0.47
UPF1-207ENST00000599848 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.01■□□□□ 0.47
UPF1-207ENST00000599848 EXOGQ9Y2C4 368 aaKnown RBP18.01■□□□□ 0.47
UPF1-207ENST00000599848 ARL2-SNX15V9GYD0 113 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 TPPP2P59282 170 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 IL24Q13007 206 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 C3AR1Q16581 482 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 WDR73Q6P4I2 378 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 OR1B1Q8NGR6 318 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 PCNPQ8WW12 178 aaKnown RBP18.01■□□□□ 0.47
UPF1-207ENST00000599848 FAAP24Q9BTP7 215 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 STARD10Q9Y365 291 aa18.01■□□□□ 0.47
UPF1-207ENST00000599848 MYH15Q9Y2K3 1946 aa18■□□□□ 0.47
UPF1-207ENST00000599848 GUCA2BQ16661 112 aa18■□□□□ 0.47
UPF1-207ENST00000599848 TMEM97Q5BJF2 176 aa18■□□□□ 0.47
UPF1-207ENST00000599848 MRM1Q6IN84 353 aaKnown RBP18■□□□□ 0.47
UPF1-207ENST00000599848 SH3BGRL3Q9H299 93 aa18■□□□□ 0.47
UPF1-207ENST00000599848 WIPI2Q9Y4P8 454 aa18■□□□□ 0.47
UPF1-207ENST00000599848 BCL2L11O43521 198 aa18■□□□□ 0.47
UPF1-207ENST00000599848 CST4P01036 141 aa18■□□□□ 0.47
UPF1-207ENST00000599848 SBK3P0C264 359 aa18■□□□□ 0.47
UPF1-207ENST00000599848 PCSK4Q6UW60 755 aa18■□□□□ 0.47
UPF1-207ENST00000599848 ZNF418Q8TF45 676 aaPredicted RBP18■□□□□ 0.47
UPF1-207ENST00000599848 RAX2Q96IS3 184 aa18■□□□□ 0.47
UPF1-207ENST00000599848 SLC52A3Q9NQ40 469 aa18■□□□□ 0.47
UPF1-207ENST00000599848 ITGB4P16144 1822 aa18■□□□□ 0.47
UPF1-207ENST00000599848 SS18L1O75177 396 aaPredicted RBP18■□□□□ 0.47
UPF1-207ENST00000599848 CCL2P13500 99 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms