RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 IKZF1Q13422 519 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 NSUN5P2Q63ZY6 315 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 TMEM211Q6ICI0 200 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 TMEM65Q6PI78 240 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 GSG1LQ6UXU4 331 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 Q6ZS92 163 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 CXorf67Q86X51 503 aaPredicted RBP12.34□□□□□ -0.43
VRK3-217ENST00000599538 OR1J1Q8NGS3 322 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 COL25A1Q9BXS0 654 aaPredicted RBP12.34□□□□□ -0.43
VRK3-217ENST00000599538 CEP295Q9C0D2 2601 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 PIEZO2Q9H5I5 2752 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 ZNF286AQ9HBT8 521 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 PLSCR4Q9NRQ2 329 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 RCC2Q9P258 522 aaKnown RBP12.34□□□□□ -0.43
VRK3-217ENST00000599538 LINC00862A6NCI5 91 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 H0YIZ8 118 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 H0YL77 283 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 CGAP01215 116 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 CTSDP07339 412 aaPredicted RBP12.34□□□□□ -0.43
VRK3-217ENST00000599538 HOXB5P09067 269 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 GLI4P10075 376 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 C4BPBP20851 252 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 RBMXP38159 391 aaKnown RBP12.34□□□□□ -0.43
VRK3-217ENST00000599538 PSG7Q13046 419 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 CLLU1Q5K131 121 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 INO80CQ6PI98 192 aaPredicted RBP12.34□□□□□ -0.43
VRK3-217ENST00000599538 DMRTA2Q96SC8 542 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 RNF126Q9BV68 326 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 GSX2Q9BZM3 304 aa12.34□□□□□ -0.43
VRK3-217ENST00000599538 CHMP1AQ9HD42 196 aaPredicted RBP12.34□□□□□ -0.43
VRK3-217ENST00000599538 FAM90A10PA6NDY2 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A18PA6NE21 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A16PA6NEW6 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A20PA6NIJ5 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A8PA6NJQ4 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A7PA6NKC0 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 OR5B21A6NL26 309 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 POM121CA8CG34 1229 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A22PA8MWA6 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A12PA8MX19 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A5PA8MXJ8 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A23PA8MXZ1 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 WDR1O75083 606 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 SPDEFO95238 335 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 IGKV3-15P01624 115 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A15PP0C7V4 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A13PP0C7W8 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A14PP0C7W9 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 FAM90A24PP0C7X0 464 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 PIGPP57054 158 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 HOXA4Q00056 320 aaPredicted RBP12.33□□□□□ -0.44
VRK3-217ENST00000599538 SP6Q3SY56 376 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 PLEKHN1Q494U1 663 aaPredicted RBP12.33□□□□□ -0.44
VRK3-217ENST00000599538 C20orf204Q6ZNR8 217 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 ZNF573Q86YE8 665 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 COQ8AQ8NI60 647 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 PRRX2Q99811 253 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 HEATR1Q9H583 2144 aaKnown RBP12.33□□□□□ -0.44
VRK3-217ENST00000599538 RAB18Q9NP72 206 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 CADP27708 2225 aa12.33□□□□□ -0.44
VRK3-217ENST00000599538 A0A0B4J2A0 478 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 CRYM-AS1A6NIL9 109 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 HS3ST1O14792 307 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 CNOT4O95628 575 aaKnown RBP12.32□□□□□ -0.44
VRK3-217ENST00000599538 NAPSAO96009 420 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 SCTP09683 121 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 CBR1P16152 277 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 PSMB6P28072 239 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 IL24Q13007 206 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 PHLDA2Q53GA4 152 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 OR11L1Q8NGX0 322 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 RDH5Q92781 318 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 VRK1Q99986 396 aaPredicted RBP12.32□□□□□ -0.44
VRK3-217ENST00000599538 METTL8Q9H825 291 aaKnown RBP12.32□□□□□ -0.44
VRK3-217ENST00000599538 SHPKQ9UHJ6 478 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 TRAV24A0A0B4J272 114 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 TEX13DA0A0J9YY54 714 aaPredicted RBP12.32□□□□□ -0.44
VRK3-217ENST00000599538 RLN2P04090 185 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 ZNF728P0DKX0 622 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 AADACP22760 399 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 PMELP40967 661 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 MRPL49Q13405 166 aaKnown RBP12.32□□□□□ -0.44
VRK3-217ENST00000599538 MPV17LQ2QL34 196 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 CCDC36Q8IYA8 594 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 KCNRGQ8N5I3 272 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 SUMF2Q8NBJ7 301 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 SNIP1Q8TAD8 396 aaKnown RBP12.32□□□□□ -0.44
VRK3-217ENST00000599538 KLF14Q8TD94 323 aaPredicted RBP12.32□□□□□ -0.44
VRK3-217ENST00000599538 NMES1Q9C002 83 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 Q9N2K0 584 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 ZNF71Q9NQZ8 489 aaPredicted RBP12.32□□□□□ -0.44
VRK3-217ENST00000599538 FZR1Q9UM11 496 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 FAM215AQ9Y5M1 114 aa12.32□□□□□ -0.44
VRK3-217ENST00000599538 MBD3L4A6NDZ8 208 aaPredicted RBP12.31□□□□□ -0.44
VRK3-217ENST00000599538 MBD3L3A6NE82 208 aaPredicted RBP12.31□□□□□ -0.44
VRK3-217ENST00000599538 MBD3L5A6NJ08 208 aaPredicted RBP12.31□□□□□ -0.44
VRK3-217ENST00000599538 IFNA2P01563 188 aa12.31□□□□□ -0.44
VRK3-217ENST00000599538 CECR9P0C854 216 aa12.31□□□□□ -0.44
VRK3-217ENST00000599538 ZNF154Q13106 437 aa12.31□□□□□ -0.44
VRK3-217ENST00000599538 RBM39Q14498 530 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms