RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ABCG5Q9H222 651 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 LPAR2Q9HBW0 351 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 RASL12Q9NYN1 266 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 IL36RNQ9UBH0 155 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 PEX16Q9Y5Y5 336 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 NF1P21359 2839 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 ANK3Q12955 4377 aaKnown RBP12.5□□□□□ -0.41
TRIM28-207ENST00000597136 TNFRSF13BO14836 293 aaPredicted RBP12.5□□□□□ -0.41
TRIM28-207ENST00000597136 EIF4EP06730 217 aaKnown RBP12.5□□□□□ -0.41
TRIM28-207ENST00000597136 PRKACAP17612 351 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 ELK1P19419 428 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 RBM11P57052 281 aaKnown RBP12.5□□□□□ -0.41
TRIM28-207ENST00000597136 PIGYQ3MUY2 71 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 TMEM155Q4W5P6 130 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 NHLRC3Q5JS37 347 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 CYB5R2Q6BCY4 276 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 ACP7Q6ZNF0 438 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 FAM90A1Q86YD7 464 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 OR5T2Q8NGG2 359 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 Q96M66 194 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 LPAR5Q9H1C0 372 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 PATZ1Q9HBE1 687 aaKnown RBP12.5□□□□□ -0.41
TRIM28-207ENST00000597136 ST3GAL6Q9Y274 331 aa12.5□□□□□ -0.41
TRIM28-207ENST00000597136 A0A0A6YYD4 124 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 CEACAM18A8MTB9 384 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 LGALS8O00214 317 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 CD5LO43866 347 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 GYPAP02724 150 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 WNT2P09544 360 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 ZNF16P17020 682 aaPredicted RBP12.49□□□□□ -0.41
TRIM28-207ENST00000597136 TNFSF8P32971 234 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 S100A5P33763 92 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 SMIM21Q3B7S5 101 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 FAM89BQ8N5H3 189 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 RAB40AQ8WXH6 277 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 C1orf159Q96HA4 380 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 NICN1Q9BSH3 213 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 URM1Q9BTM9 101 aaKnown RBP12.49□□□□□ -0.41
TRIM28-207ENST00000597136 TM2D1Q9BX74 207 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 PCDHB10Q9UN67 800 aa12.49□□□□□ -0.41
TRIM28-207ENST00000597136 JMJD1CQ15652 2540 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 METTL21EPA6NDL7 271 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 OOEPA6NGQ2 149 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 GEMIN2O14893 280 aaKnown RBP12.48□□□□□ -0.41
TRIM28-207ENST00000597136 FCN3O75636 299 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 TGFAP01135 160 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 HEXAP06865 529 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 AMY2BP19961 511 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 ZFP36P26651 326 aaKnown RBP12.48□□□□□ -0.41
TRIM28-207ENST00000597136 GZMKP49863 264 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 SNU13P55769 128 aaKnown RBP12.48□□□□□ -0.41
TRIM28-207ENST00000597136 METAP1DQ6UB28 335 aaPredicted RBP12.48□□□□□ -0.41
TRIM28-207ENST00000597136 S100A16Q96FQ6 103 aaKnown RBP12.48□□□□□ -0.41
TRIM28-207ENST00000597136 POM121Q96HA1 1249 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 WDFY2Q96P53 400 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 ATG5Q9H1Y0 275 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 YAE1D1Q9NRH1 226 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 ADAM30Q9UKF2 790 aa12.48□□□□□ -0.41
TRIM28-207ENST00000597136 A0A1B0GW55 424 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 FAM25AB3EWG3 89 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 FAM25CB3EWG5 89 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 FAM25GB3EWG6 89 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 F5H0A9 414 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DUX4L2P0CJ85 424 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DUX4L3P0CJ86 424 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DUX4L4P0CJ87 422 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DUX4L5P0CJ88 424 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DUX4L6P0CJ89 424 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DUX4L7P0CJ90 424 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 CPT2P23786 658 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 CDK2P24941 298 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DUSP1P28562 367 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 PITPNBP48739 271 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 VEGFCP49767 419 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 IL13RA2Q14627 380 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 ZNF146Q15072 292 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 FAM189A2Q15884 450 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 TAF9Q16594 264 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 SPIN3Q5JUX0 258 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 TEX36Q5VZQ5 186 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DUX4L9Q6RFH8 374 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-207ENST00000597136 FIP1L1Q6UN15 594 aaKnown RBP12.47□□□□□ -0.41
TRIM28-207ENST00000597136 LINC00299Q6ZSB3 139 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 MUC20Q8N307 709 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-207ENST00000597136 FGFRL1Q8N441 504 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 SPICQ8N5J4 248 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 LINC01356Q8N9X3 169 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 ZNF581Q9P0T4 197 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 NLKQ9UBE8 527 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 CTSZQ9UBR2 303 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DNAJB11Q9UBS4 358 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 DUX4Q9UBX2 424 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 C2CD3Q4AC94 2353 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 TRAV38-1A0A0B4J264 116 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 RAB27BO00194 218 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 PHF1O43189 567 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-207ENST00000597136 FSTL3O95633 263 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 KNG1P01042 644 aa12.47□□□□□ -0.41
TRIM28-207ENST00000597136 MUC1P15941 1255 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-207ENST00000597136 GABRR1P24046 479 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms