RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 OR2H2O95918 312 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 PRSS3P35030 304 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 CEBPDP49716 269 aaPredicted RBP12.3□□□□□ -0.44
VRK3-212ENST00000596814 DGCR2P98153 550 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 PNLIPRP3Q17RR3 467 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 MICBQ29980 383 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 OLFML2AQ68BL7 652 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 SFRP4Q6FHJ7 346 aaPredicted RBP12.3□□□□□ -0.44
VRK3-212ENST00000596814 C19orf18Q8NEA5 215 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 IGFBPL1Q8WX77 278 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 ST8SIA4Q92187 359 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 YIPF5Q969M3 257 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 CYYR1Q96J86 154 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 DLL4Q9NR61 685 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 ELF5Q9UKW6 265 aaPredicted RBP12.3□□□□□ -0.44
VRK3-212ENST00000596814 KCNK7Q9Y2U2 307 aa12.3□□□□□ -0.44
VRK3-212ENST00000596814 TRAV24A0A0B4J272 114 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 SIRPB1O00241 398 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 GSTZ1O43708 216 aaPredicted RBP12.29□□□□□ -0.44
VRK3-212ENST00000596814 UPK1BO75841 260 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 ZNF205O95201 554 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 MELTFP08582 738 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 PSG2P11465 335 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 SSTR2P30874 369 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 GNG2P59768 71 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 MRPS11P82912 194 aaKnown RBP12.29□□□□□ -0.44
VRK3-212ENST00000596814 GUCA2AQ02747 115 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 DCTN2Q13561 401 aaKnown RBP12.29□□□□□ -0.44
VRK3-212ENST00000596814 BAK1Q16611 211 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 HACD4Q5VWC8 232 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 TEX36Q5VZQ5 186 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 TRIQKQ629K1 86 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 C16orf87Q6PH81 154 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 OR5T2Q8NGG2 359 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 OR52I2Q8NH67 350 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 FCAMRQ8WWV6 532 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 RDH5Q92781 318 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 SULT4A1Q9BR01 284 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 CXorf56Q9H5V9 222 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 SCPEP1Q9HB40 452 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 ABCB10Q9NRK6 738 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 GCN1Q92616 2671 aaKnown RBP12.29□□□□□ -0.44
VRK3-212ENST00000596814 USF3Q68DE3 2245 aa12.29□□□□□ -0.44
VRK3-212ENST00000596814 PPIAL4EA0A075B759 164 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 MEIOCA2RUB1 952 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 PPIAL4DF5H284 164 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 LYNX1G3V0Z9 82 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 LGALS8O00214 317 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 SULT1C2O00338 296 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 SLC33A1O00400 549 aaPredicted RBP12.28□□□□□ -0.44
VRK3-212ENST00000596814 HSPB6O14558 160 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 LY6HO94772 140 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 LPLP06858 475 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 CSF3P09919 207 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 PPIAL4FP0DN26 164 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 LYNX1P0DP58 116 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 IL7P13232 177 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 DAOP14920 347 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 MUC1P15941 1255 aaPredicted RBP12.28□□□□□ -0.44
VRK3-212ENST00000596814 COL8A2P25067 703 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 ARFRP1Q13795 201 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 STUMQ69YW2 141 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 BRICD5Q6PL45 260 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 SUMF2Q8NBJ7 301 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 NUDCD2Q8WVJ2 157 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 TRIM63Q969Q1 353 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 MARVELD3Q96A59 401 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 FAAP24Q9BTP7 215 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 DPCDQ9BVM2 203 aaPredicted RBP12.28□□□□□ -0.44
VRK3-212ENST00000596814 PPIAL4AQ9Y536 164 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 IGKV1D-17A0A075B6S4 117 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 TRAV38-1A0A0B4J264 116 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 MCRIP1C9JLW8 97 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 CA11O75493 328 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 RP2O75695 350 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 GLAP06280 429 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 CD3GP09693 182 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 PRDX2P32119 198 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 EFNA4P52798 201 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 PAN3Q58A45 887 aaKnown RBP12.28□□□□□ -0.44
VRK3-212ENST00000596814 DEFB108BQ8NET1 73 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 ANGPTL6Q8NI99 470 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 NEK7Q8TDX7 302 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 GPX8Q8TED1 209 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 THAP7Q9BT49 309 aaPredicted RBP12.28□□□□□ -0.44
VRK3-212ENST00000596814 SEBOXQ9HB31 216 aaPredicted RBP12.28□□□□□ -0.44
VRK3-212ENST00000596814 PALMDQ9NP74 551 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 AK3Q9UIJ7 227 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 ZNF222Q9UK12 451 aa12.28□□□□□ -0.44
VRK3-212ENST00000596814 UBE2QL1A1L167 161 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 MEIS3P1A6NDR6 274 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 TFF1P04155 84 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 LMO1P25800 156 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 GABRA2P47869 451 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 MRPS15P82914 257 aaKnown RBP12.27□□□□□ -0.45
VRK3-212ENST00000596814 COL10A1Q03692 680 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 RBM39Q14498 530 aaKnown RBP12.27□□□□□ -0.45
VRK3-212ENST00000596814 ZNF787Q6DD87 383 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 DNM1P46Q6ZS02 220 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 TRAPPC6BQ86SZ2 158 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms