RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 MIDNQ504T8 468 aa8.47□□□□□ -1.05
LIG1-213ENST00000596672 NCR3LG1Q68D85 454 aa8.47□□□□□ -1.05
LIG1-213ENST00000596672 BRICD5Q6PL45 260 aa8.47□□□□□ -1.05
LIG1-213ENST00000596672 RGP1Q92546 391 aaPredicted RBP8.47□□□□□ -1.05
LIG1-213ENST00000596672 RFT1Q96AA3 541 aa8.47□□□□□ -1.05
LIG1-213ENST00000596672 CYYR1Q96J86 154 aa8.47□□□□□ -1.05
LIG1-213ENST00000596672 CEP19Q96LK0 163 aa8.47□□□□□ -1.05
LIG1-213ENST00000596672 DPAGT1Q9H3H5 408 aa8.47□□□□□ -1.05
LIG1-213ENST00000596672 PTTG2Q9NZH5 202 aa8.47□□□□□ -1.05
LIG1-213ENST00000596672 FOXJ3Q9UPW0 622 aa8.47□□□□□ -1.05
LIG1-213ENST00000596672 SF3B6Q9Y3B4 125 aaKnown RBP8.47□□□□□ -1.05
LIG1-213ENST00000596672 MRPS14O60783 128 aaKnown RBP8.46□□□□□ -1.06
LIG1-213ENST00000596672 ATF1P18846 271 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 OR3A1P47881 315 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 FUT6P51993 359 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 TMED1Q13445 227 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 PLA1AQ53H76 456 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 XAF1Q6GPH4 301 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 DHRS7BQ6IAN0 325 aaPredicted RBP8.46□□□□□ -1.06
LIG1-213ENST00000596672 GDPGP1Q6ZNW5 385 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 PRSS48Q7RTY5 328 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 LHFPL3Q86UP9 236 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 EGFL6Q8IUX8 553 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 OR5D13Q8NGL4 314 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 WIPF2Q8TF74 440 aaPredicted RBP8.46□□□□□ -1.06
LIG1-213ENST00000596672 RFKQ969G6 155 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 TMEM80Q96HE8 168 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 NKX3-1Q99801 234 aaPredicted RBP8.46□□□□□ -1.06
LIG1-213ENST00000596672 CHST6Q9GZX3 395 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 CNOT2Q9NZN8 540 aaKnown RBP8.46□□□□□ -1.06
LIG1-213ENST00000596672 ZNF581Q9P0T4 197 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 FBLN5Q9UBX5 448 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 POLDIP2Q9Y2S7 368 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 DNAH9Q9NYC9 4486 aa8.46□□□□□ -1.06
LIG1-213ENST00000596672 SNTNA6NMZ2 147 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 J3QLW9 94 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 HAND1O96004 215 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 ISG15P05161 165 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 ZNF728P0DKX0 622 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 IGHV1-8P0DP01 117 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 ZNF19P17023 458 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 AZGP1P25311 298 aaKnown RBP8.45□□□□□ -1.06
LIG1-213ENST00000596672 TGFBR2P37173 567 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 SNU13P55769 128 aaKnown RBP8.45□□□□□ -1.06
LIG1-213ENST00000596672 LSAMPQ13449 338 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 LRRC75BQ2VPJ9 315 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 KLHL22Q53GT1 634 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 FOXB2Q5VYV0 432 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 ZNF626Q68DY1 528 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 Q6P435 159 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 UTS2BQ765I0 119 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 GPR141Q7Z602 305 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 OR8H2Q8N162 312 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 SVOPQ8N4V2 548 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 C11orf44Q8N8P7 122 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 ASCC1Q8N9N2 400 aaKnown RBP8.45□□□□□ -1.06
LIG1-213ENST00000596672 OR52I1Q8NGK6 324 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 MUL1Q969V5 352 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 C4orf36Q96KX1 117 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 FAM234AQ9H0X4 552 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 ZNF702PQ9H963 129 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 SERTAD4Q9NUC0 356 aa8.45□□□□□ -1.06
LIG1-213ENST00000596672 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.45□□□□□ -1.06
LIG1-213ENST00000596672 SIRT4Q9Y6E7 314 aaPredicted RBP8.45□□□□□ -1.06
LIG1-213ENST00000596672 A6NDX4 124 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 CCDC160A6NGH7 325 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 ADARB2-AS1A8MUL3 147 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 PAHP00439 452 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 CHRM2P08172 466 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 LIMS3P0CW19 117 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 LIMS4P0CW20 117 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 ATP6V1E1P36543 226 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 KIR2DS4P43632 304 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 POU3F4P49335 361 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 GP2P55259 537 aaKnown RBP8.44□□□□□ -1.06
LIG1-213ENST00000596672 EDDM3BP56851 147 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 ZP1P60852 638 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 PDZK1IP1Q13113 114 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 EDDM3AQ14507 147 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 IRF3Q14653 427 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 ZNF146Q15072 292 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 CDK5R1Q15078 307 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 PDLIM3Q53GG5 364 aaPredicted RBP8.44□□□□□ -1.06
LIG1-213ENST00000596672 TMEM219Q86XT9 240 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 C1QL4Q86Z23 238 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 FAM58AQ8N1B3 248 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 DNAAF1Q8NEP3 725 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 OR11H6Q8NGC7 330 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 OR5D18Q8NGL1 313 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 OR13C9Q8NGT0 318 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 OR5R1Q8NH85 324 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 CFHR4Q92496 578 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 EMG1Q92979 244 aaKnown RBP8.44□□□□□ -1.06
LIG1-213ENST00000596672 BORCS8Q96FH0 119 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 COQ2Q96H96 371 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 SNX22Q96L94 193 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 HEXA-AS1Q9H8Q6 139 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 SEBOXQ9HB31 216 aaPredicted RBP8.44□□□□□ -1.06
LIG1-213ENST00000596672 TCF7L1Q9HCS4 588 aa8.44□□□□□ -1.06
LIG1-213ENST00000596672 HMG20AQ9NP66 347 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms