RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 OPN1MWP04001 364 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 OPN1MW2P0DN77 364 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 OPN1MW3P0DN78 364 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 TMEM219Q86XT9 240 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 ZNF649Q9BS31 505 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 C9orf16Q9BUW7 83 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 S100A14Q9HCY8 104 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 GLS2Q9UI32 602 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 TCF19Q9Y242 345 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 LINC00312Q9Y6C7 94 aa16.51■□□□□ 0.23
SHMT1-209ENST00000582653 LOC100130705A0A1B0GUX0 176 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 SH2D1BO14796 132 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 MGST3O14880 152 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 OR2H2O95918 312 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 HABP2Q14520 560 aaPredicted RBP16.5■□□□□ 0.23
SHMT1-209ENST00000582653 SPIN3Q5JUX0 258 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 BAIAP2L2Q6UXY1 529 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 ZBTB49Q6ZSB9 765 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 Q8N2B8 174 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 FOXRED1Q96CU9 486 aaPredicted RBP16.5■□□□□ 0.23
SHMT1-209ENST00000582653 ZCCHC4Q9H5U6 513 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 NEK6Q9HC98 313 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 EXOSC4Q9NPD3 245 aaKnown RBP16.5■□□□□ 0.23
SHMT1-209ENST00000582653 ABCB10Q9NRK6 738 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 ERVK13-1Q9NX77 482 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 PITPNC1Q9UKF7 332 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 HILPDAQ9Y5L2 63 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 SESN1Q9Y6P5 492 aa16.5■□□□□ 0.23
SHMT1-209ENST00000582653 DSCAML1Q8TD84 2053 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 IGHV2-26A0A0B4J1V2 119 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 A6NDX4 124 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 KDM4BO94953 1096 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 ZFPL1O95159 310 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 MT-ND2P03891 347 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 VSIG10L2P0DP72 767 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 DYNLT3P51808 116 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 P2RX3P56373 397 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 SCN1BQ07699 218 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 TRAPPC6BQ86SZ2 158 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 SYS1Q8N2H4 156 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 OR52I1Q8NGK6 324 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 MRPL48Q96GC5 212 aaKnown RBP16.49■□□□□ 0.23
SHMT1-209ENST00000582653 Q96MT0 163 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 PDCD1LG2Q9BQ51 273 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 TMEM133Q9H2Q1 129 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 ZNF702PQ9H963 129 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 SERTAD4Q9NUC0 356 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 FAM118AQ9NWS6 357 aa16.49■□□□□ 0.23
SHMT1-209ENST00000582653 MPZL2O60487 215 aa16.48■□□□□ 0.23
SHMT1-209ENST00000582653 FADS2O95864 444 aaKnown RBP16.48■□□□□ 0.23
SHMT1-209ENST00000582653 ERP29P30040 261 aaKnown RBP16.48■□□□□ 0.23
SHMT1-209ENST00000582653 GLIPR1P48060 266 aa16.48■□□□□ 0.23
SHMT1-209ENST00000582653 AESQ08117 197 aa16.48■□□□□ 0.23
SHMT1-209ENST00000582653 C10orf67Q8IYJ2 551 aa16.48■□□□□ 0.23
SHMT1-209ENST00000582653 PQLC1Q8N2U9 271 aa16.48■□□□□ 0.23
SHMT1-209ENST00000582653 RPS4Y2Q8TD47 263 aa16.48■□□□□ 0.23
SHMT1-209ENST00000582653 APH1BQ8WW43 257 aa16.48■□□□□ 0.23
SHMT1-209ENST00000582653 ING3Q9NXR8 418 aa16.48■□□□□ 0.23
SHMT1-209ENST00000582653 G3V4G9 280 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 HCKP08631 526 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 TMEM225BP0DP42 221 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 LMO1P25800 156 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 EMX1Q04741 257 aaPredicted RBP16.47■□□□□ 0.23
SHMT1-209ENST00000582653 RAB40BQ12829 278 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 BEAN1Q3B7T3 259 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 PRAMEF5Q5TYX0 476 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 SERPINA12Q8IW75 414 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 OR5AK2Q8NH90 309 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 NDNFQ8TB73 568 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 CLEC7AQ9BXN2 247 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 COMMD4Q9H0A8 199 aa16.47■□□□□ 0.23
SHMT1-209ENST00000582653 UBE2J1Q9Y385 318 aaPredicted RBP16.47■□□□□ 0.23
SHMT1-209ENST00000582653 FAM172BPA6NC97 362 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 ZNF44P15621 663 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 GDNFP39905 211 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 GTF2A1P52655 376 aaPredicted RBP16.46■□□□□ 0.23
SHMT1-209ENST00000582653 GBX2P52951 348 aaPredicted RBP16.46■□□□□ 0.23
SHMT1-209ENST00000582653 ZP1P60852 638 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 SLC34A1Q06495 639 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 IL18R1Q13478 541 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 KISS1Q15726 138 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 SMN1Q16637 294 aaKnown RBP16.46■□□□□ 0.23
SHMT1-209ENST00000582653 KPRPQ5T749 579 aaPredicted RBP16.46■□□□□ 0.23
SHMT1-209ENST00000582653 SAMD5Q5TGI4 173 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 MINOS1Q5TGZ0 78 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 Q6P435 159 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 Q6ZS46 218 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 SAXO1Q8IYX7 474 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 LYG1Q8N1E2 194 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 PARP16Q8N5Y8 322 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 OR5D14Q8NGL3 314 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 PRSS22Q9GZN4 317 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 DHDHQ9UQ10 334 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 MINOS1-NBL1R4GNA1 71 aa16.46■□□□□ 0.23
SHMT1-209ENST00000582653 TRGV10A0A0A0MS01 117 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 TMEM212A6NML5 194 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 SULT1B1O43704 296 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 BAG2O95816 211 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 CDK2P24941 298 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 CDK5R1Q15078 307 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms