RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 NEDD4LQ96PU5 975 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 TNFRSF13CQ96RJ3 184 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 HOPXQ9BPY8 73 aaPredicted RBP5.07□□□□□ -1.6
VPS53-212ENST00000572259 DCUN1D5Q9BTE7 237 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 OR51M1Q9H341 326 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 ZNF385DQ9H6B1 395 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 NANOGQ9H9S0 305 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 EFCAB1Q9HAE3 211 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 C12orf10Q9HB07 376 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 SLC25A37Q9NYZ2 338 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 TMEM181Q9P2C4 612 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 IL36RNQ9UBH0 155 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 V9GYY9 64 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 MYO9AB2RTY4 2548 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 TACC2O95359 2948 aa5.07□□□□□ -1.6
VPS53-212ENST00000572259 TEX15Q9BXT5 2789 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 A0A1B0GUS0 222 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 hDV102S1A0JD36 115 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 NKX6-3A6NJ46 265 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 TNFRSF13BO14836 293 aaPredicted RBP5.06□□□□□ -1.6
VPS53-212ENST00000572259 MRPL33O75394 65 aaKnown RBP5.06□□□□□ -1.6
VPS53-212ENST00000572259 SC5DO75845 299 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 GAGE7O76087 117 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 VAMP5O95183 116 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 GAGE12FP0CL80 117 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 GAGE12GP0CL81 117 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 GAGE12IP0CL82 117 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 RD3LP0DJH9 198 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 IGHV4-31P0DP07 118 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 MTPNP58546 118 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 RIPPLY1Q0D2K3 151 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 TSPAN31Q12999 210 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 GAGE1Q13065 139 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 GAGE4Q13068 117 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 P2RY6Q15077 328 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 UBE2V2Q15819 145 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 C5orf64Q2M2E5 130 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 REP15Q6BDI9 236 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 ATRAIDQ6UW56 229 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 SLC25A48Q6ZT89 311 aaKnown RBP5.06□□□□□ -1.6
VPS53-212ENST00000572259 OR2W3Q7Z3T1 314 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 C1QL2Q7Z5L3 287 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 MSRB3Q8IXL7 192 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 BOD1L2Q8IYS8 172 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 RNF113BQ8IZP6 322 aaKnown RBP5.06□□□□□ -1.6
VPS53-212ENST00000572259 ZSCAN4Q8NAM6 433 aaPredicted RBP5.06□□□□□ -1.6
VPS53-212ENST00000572259 ZNF680Q8NEM1 530 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 OR52E4Q8NGH9 312 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 OR10V1Q8NGI7 309 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 ABHD3Q8WU67 409 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 C10orf82Q8WW14 230 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 LZICQ8WZA0 190 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 EPYCQ99645 322 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 ATP5SQ99766 215 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 NEURL2Q9BR09 285 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 MED18Q9BUE0 208 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 ACTR3CQ9C0K3 210 aaPredicted RBP5.06□□□□□ -1.6
VPS53-212ENST00000572259 FAM107BQ9H098 131 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 TOLLIPQ9H0E2 274 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 SLC7A7Q9UM01 511 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 PLCE1Q9P212 2302 aa5.06□□□□□ -1.6
VPS53-212ENST00000572259 POLQO75417 2590 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 TMEM72A0PK05 275 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 CLDN34H7C241 214 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 EI24O14681 340 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 SPRY3O43610 288 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 GPX5O75715 221 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 DCTN3O75935 186 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 CGAP01215 116 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 C1QCP02747 245 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 CD3GP09693 182 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 FAM157CP0CG43 387 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 COX4I1P13073 169 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 SHC1P29353 583 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 AQP1P29972 269 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 AGTR1P30556 359 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 RPL4P36578 427 aaKnown RBP5.05□□□□□ -1.6
VPS53-212ENST00000572259 MNAT1P51948 309 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 GNGT1P63211 74 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 TGFBR3Q03167 851 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 GUSBP1Q15486 140 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 OR7A5Q15622 319 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 SGCAQ16586 387 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 RPEL1Q2QD12 228 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 ODF3L2Q3SX64 289 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 C1orf140Q5VVS0 124 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 FAHD2BQ6P2I3 314 aaPredicted RBP5.05□□□□□ -1.6
VPS53-212ENST00000572259 ZNF730Q6ZMV8 503 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 Q6ZSV7 163 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 FAM89BQ8N5H3 189 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 OR2T12Q8NG77 320 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 MFSD8Q8NHS3 518 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 LINC01560Q8TB33 94 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 TEX47Q8TBZ9 253 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 MUCL1Q96DR8 90 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 FAHD2AQ96GK7 314 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 URB1-AS1Q96HZ7 61 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 MCHR1Q99705 422 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 KLHDC3Q9BQ90 382 aa5.05□□□□□ -1.6
VPS53-212ENST00000572259 SRXN1Q9BYN0 137 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms