RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 UCN2Q96RP3 112 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 MFRPQ9BY79 579 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 DEFB108AA8MXU0 73 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 ZNF737O75373 536 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 ZNF205O95201 554 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 GALR1P47211 349 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 TMEM241Q24JQ0 296 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.5□□□□□ -0.25
CIITA-204ENST00000570546 TMEM65Q6PI78 240 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 OR10D4PQ8NGN7 298 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 PLPPR2Q96GM1 343 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 ZNF251Q9BRH9 671 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 A0A0G2JMZ2 1700 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 LRRC37A2A6NM11 1700 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 SCN3AQ9NY46 2000 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 OR5B21A6NL26 309 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 MEOX2P50222 304 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 OR2Z1Q8NG97 314 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 OR2Y1Q8NGV0 311 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 OR2D2Q9H210 308 aa13.5□□□□□ -0.25
CIITA-204ENST00000570546 TRBV5-7A0A0A0MS05 114 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 HPP00738 406 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 CCL3P10147 92 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 MGAT2Q10469 447 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 TUSC1Q2TAM9 212 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 UNQ9370/PRO34162Q6UXP9 181 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 OR5B3Q8NH48 314 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 ATP5SQ99766 215 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 OR2H1Q9GZK4 316 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 TRGV10A0A0A0MS01 117 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 KCNAB3O43448 404 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 MBPP02686 304 aaPredicted RBP13.49□□□□□ -0.25
CIITA-204ENST00000570546 NTF3P20783 257 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 FGF8P55075 233 aaPredicted RBP13.49□□□□□ -0.25
CIITA-204ENST00000570546 WFDC8Q8IUA0 241 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 SLC2A9Q9NRM0 540 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 GPR27Q9NS67 375 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 ZNF586Q9NXT0 402 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 TSPAN2O60636 221 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 NMBP08949 121 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 PIGYQ3MUY2 71 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 LHFPL5Q8TAF8 219 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 PSG11Q9UQ72 335 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 MPC1Q9Y5U8 109 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 PHOX2AO14813 284 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 PPYP01298 95 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 SPINK14Q6IE38 97 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 OVCH2Q7RTZ1 564 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 RSRP1Q9BUV0 290 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 AMDHD2Q9Y303 409 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 LIPGQ9Y5X9 500 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 URB1O60287 2271 aaKnown RBP13.49□□□□□ -0.25
CIITA-204ENST00000570546 IGHV5-10-1A0A0J9YXX1 117 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 PRRG2O14669 202 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 SPRY3O43610 288 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 PLPPR5Q32ZL2 321 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 LYZL2Q7Z4W2 148 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 GAPTQ8N292 157 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 DEFB123Q8N688 67 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 OR11H4Q8NGC9 324 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 TMEM9BQ9NQ34 198 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 KCNK7Q9Y2U2 307 aa13.49□□□□□ -0.25
CIITA-204ENST00000570546 HLA-DRB3P79483 266 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 ROM1Q03395 351 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 OR2A2Q6IF42 318 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 PARP11Q9NR21 331 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 FZR1Q9UM11 496 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 TRAPPC1Q9Y5R8 145 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 FCGR3BO75015 233 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 ARG1P05089 322 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 CTRB1P17538 263 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 Q3ZCU0 254 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 CTRB2Q6GPI1 263 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 ZNF66Q6ZN08 573 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 DYRK2Q92630 601 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 FAM210BQ96KR6 192 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 NEUROG3Q9Y4Z2 214 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 FCARP24071 287 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 LGALS4P56470 323 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 SMUG1Q53HV7 270 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 C19orf48Q6RUI8 117 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 CT55Q8WUE5 264 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 POM121L2Q96KW2 1035 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 NPAS1Q99742 590 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 THY1P04216 161 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 LIFP15018 202 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 FOXL2P58012 376 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 ZNF154Q13106 437 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 COL19A1Q14993 1142 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 GAB4Q2WGN9 574 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 RFESDQ8TAC1 157 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 ISOC2Q96AB3 205 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 HDHD3Q9BSH5 251 aaPredicted RBP13.48□□□□□ -0.25
CIITA-204ENST00000570546 TMEM38BQ9NVV0 291 aa13.48□□□□□ -0.25
CIITA-204ENST00000570546 F5P12259 2224 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 IGLV1-36A0A0B4J1U3 117 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 CHST1O43916 411 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 COX7A2P2O60397 106 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 ZXDAP98168 799 aa13.47□□□□□ -0.25
CIITA-204ENST00000570546 EWSR1Q01844 656 aaKnown RBP eCLIP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms