RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 GABRR1P24046 479 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 SAA4P35542 130 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 EDDM3AQ14507 147 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 GRK1Q15835 563 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 C6orf141Q5SZD1 244 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 GDPD3Q7L5L3 318 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 TCF23Q7RTU1 214 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 SATL1Q86VE3 508 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 LDLRAD3Q86YD5 345 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 NANOGP1Q8N7R0 232 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 SGMS2Q8NHU3 365 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 C17orf50Q8WW18 174 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 SSMEM1Q8WWF3 244 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 AJUBAQ96IF1 538 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 POMT1Q9Y6A1 747 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 A0A0G2JK05 382 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 C17orf98A8MV24 154 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 PTGES3LE9PB15 166 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 GABRPO00591 440 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 SH2D1BO14796 132 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 ZNF728P0DKX0 622 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 LMO1P25800 156 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 OR3A1P47881 315 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 SCN1BQ07699 218 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 ACSM1Q08AH1 577 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 FOXL1Q12952 345 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 Q6P435 159 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 C3orf56Q8N813 242 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 SGCDQ92629 289 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 HEXA-AS1Q9H8Q6 139 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 RHOFQ9HBH0 211 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 EXOSC4Q9NPD3 245 aaKnown RBP12.25□□□□□ -0.45
VPS39-210ENST00000568357 GLS2Q9UI32 602 aa12.25□□□□□ -0.45
VPS39-210ENST00000568357 TRRAPQ9Y4A5 3859 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 PNMA8CA0A1B0GUJ8 204 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 A0A1W2PPK0 400 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 MAGEB3O15480 346 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 ALDOBP05062 364 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 CDK1P06493 297 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 FBP1P09467 338 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 IGFBP3P17936 291 aaPredicted RBP12.24□□□□□ -0.45
VPS39-210ENST00000568357 OMGP23515 440 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 COX7A1P24310 79 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 WNT4P56705 351 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 MEF2CQ06413 473 aaPredicted RBP12.24□□□□□ -0.45
VPS39-210ENST00000568357 TAF9Q16594 264 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 Q499Y3 187 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 YIF1BQ5BJH7 314 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 ELP2Q6IA86 826 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 ASCL4Q6XD76 172 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 ZNF782Q6ZMW2 699 aaPredicted RBP12.24□□□□□ -0.45
VPS39-210ENST00000568357 PXT1Q8NFP0 134 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 TNFAIP8L1Q8WVP5 186 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 GPER1Q99527 375 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 TMEM138Q9NPI0 162 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 PAK1IP1Q9NWT1 392 aaPredicted RBP12.24□□□□□ -0.45
VPS39-210ENST00000568357 ZNRD1Q9P1U0 126 aa12.24□□□□□ -0.45
VPS39-210ENST00000568357 TRAV8-7A0A075B6U6 113 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 hCG_1809904A0A1W2PP81 198 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 A0A1W2PPE2 198 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 A0A1W2PR64 198 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 A0A1W2PRV1 198 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 hADV38S2A0JD32 116 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 MGST3O14880 152 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 MYL12BO14950 172 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 DEGS1O15121 323 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 GPX5O75715 221 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 CELP19835 753 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 PAX6P26367 422 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 ERP29P30040 261 aaKnown RBP12.23□□□□□ -0.45
VPS39-210ENST00000568357 PTGFRP43088 359 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 OR3A4PP47883 348 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 MTNR1BP49286 362 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 TAS2R43P59537 309 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 RELBQ01201 579 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 MIDNQ504T8 468 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 RNLSQ5VYX0 342 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 Q8NFD4 153 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 OR10K1Q8NGX5 313 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 NR1H4Q96RI1 486 aaPredicted RBP12.23□□□□□ -0.45
VPS39-210ENST00000568357 DPAGT1Q9H3H5 408 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 ERGIC3Q9Y282 383 aa12.23□□□□□ -0.45
VPS39-210ENST00000568357 TRBV5-7A0A0A0MS05 114 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 MAGEA13PA6NCF6 341 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 SLC33A1O00400 549 aaPredicted RBP12.22□□□□□ -0.45
VPS39-210ENST00000568357 PIN1P1O15428 100 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 GPR137BO60478 399 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 CDRT1O95170 752 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 PAHP00439 452 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 CD1AP06126 327 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 IGHV1-8P0DP01 117 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 ZNF44P15621 663 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 MYF6P23409 242 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 BDKRB2P30411 391 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 ZNF93P35789 620 aaPredicted RBP12.22□□□□□ -0.45
VPS39-210ENST00000568357 TGFBR2P37173 567 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 GLIPR1P48060 266 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 BMXP51813 675 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 P2RX3P56373 397 aa12.22□□□□□ -0.45
VPS39-210ENST00000568357 PPP3R1P63098 170 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms