RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PRB3Q04118 309 aaPredicted RBP16.12■□□□□ 0.17
CLN3-225ENST00000566824 CHRFAM7AQ494W8 412 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 SLC22A6Q4U2R8 563 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 SPIN3Q5JUX0 258 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 C1orf100Q5SVJ3 147 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 C22orf42Q6IC83 251 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 BTNL3Q6UXE8 466 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 CDH26Q8IXH8 852 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 NKAIN3Q8N8D7 197 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 PNLDC1Q8NA58 520 aaKnown RBP16.12■□□□□ 0.17
CLN3-225ENST00000566824 OR51T1Q8NGJ9 327 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 C8orf46Q8TAG6 207 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 RHOFQ9HBH0 211 aa16.12■□□□□ 0.17
CLN3-225ENST00000566824 EXOSC4Q9NPD3 245 aaKnown RBP16.12■□□□□ 0.17
CLN3-225ENST00000566824 CUBNO60494 3623 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 MEGF11A6BM72 1044 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 PPIAL4GP0DN37 164 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 MMP9P14780 707 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 GADD45AP24522 165 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 OR3A1P47881 315 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 TMEM104Q8NE00 496 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 SNX22Q96L94 193 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 TBX15Q96SF7 602 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 SIRPDQ9H106 197 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 RNF167Q9H6Y7 350 aa16.11■□□□□ 0.17
CLN3-225ENST00000566824 KIAA2026Q5HYC2 2103 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 IGHV3OR16-10A0A075B7F0 116 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 A0A0G2JK05 382 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 SLC33A1O00400 549 aaPredicted RBP16.1■□□□□ 0.17
CLN3-225ENST00000566824 SH2D1BO14796 132 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 ARL6IP5O75915 188 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 GABRR1P24046 479 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 AWAT2Q6E213 333 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 OR10K2Q6IF99 312 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 FIP1L1Q6UN15 594 aaKnown RBP16.1■□□□□ 0.17
CLN3-225ENST00000566824 OSR2Q8N2R0 312 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 Q8N7P7 452 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 TPRX1Q8N7U7 411 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 TBC1D15Q8TC07 691 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 SLC25A28Q96A46 364 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 UQCC2Q9BRT2 126 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 MRI1Q9BV20 369 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 FAM234AQ9H0X4 552 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 BANF2Q9H503 90 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 TXNL4BQ9NX01 149 aaKnown RBP16.1■□□□□ 0.17
CLN3-225ENST00000566824 LPAR3Q9UBY5 353 aa16.1■□□□□ 0.17
CLN3-225ENST00000566824 SOX21Q9Y651 276 aaPredicted RBP16.1■□□□□ 0.17
CLN3-225ENST00000566824 TRAV24A0A0B4J272 114 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 DEGS1O15121 323 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 GPR37O15354 613 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 IGHV4-38-2P0DP08 117 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 ZNF44P15621 663 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 CD36P16671 472 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 HNF1AP20823 631 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 LMO1P25800 156 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 SRP14P37108 136 aaKnown RBP16.09■□□□□ 0.17
CLN3-225ENST00000566824 RBM11P57052 281 aaKnown RBP16.09■□□□□ 0.17
CLN3-225ENST00000566824 OR10A3P58181 314 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 P2RY14Q15391 338 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 GLT8D1Q68CQ7 371 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 TMEM200BQ69YZ2 307 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 NR2C2APQ86WQ0 139 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 FAM185AQ8N0U4 392 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 OR8H2Q8N162 312 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 S100A13Q99584 98 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 PCGF1Q9BSM1 259 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 SLITRK2Q9H156 845 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 PPA2Q9H2U2 334 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 ONECUT1Q9UBC0 465 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 STUB1Q9UNE7 303 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 ST3GAL6Q9Y274 331 aa16.09■□□□□ 0.17
CLN3-225ENST00000566824 SMIM30A4D0T7 59 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 GEMIN2O14893 280 aaKnown RBP16.08■□□□□ 0.16
CLN3-225ENST00000566824 SLC22A1O15245 554 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 JUNBP17275 347 aaPredicted RBP16.08■□□□□ 0.16
CLN3-225ENST00000566824 SRD5A1P18405 259 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 ERVFRD-1P60508 538 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 EDDM3AQ14507 147 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 ZNF273Q14593 569 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 GRK1Q15835 563 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 C11orf91Q3C1V1 193 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 TCF23Q7RTU1 214 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 FAM46BQ96A09 425 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 UPRTQ96BW1 309 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 YIPF6Q96EC8 236 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 WDFY2Q96P53 400 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 CHCHD6Q9BRQ6 235 aa16.08■□□□□ 0.16
CLN3-225ENST00000566824 TRAV1-2A0A0B4J238 106 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 A0A1W2PQ09 198 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 HSPB6O14558 160 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 CSTBP04080 98 aaKnown RBP16.07■□□□□ 0.16
CLN3-225ENST00000566824 LIPFP07098 398 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 FAM157CP0CG43 387 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 CCL3L1P16619 93 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 GALP22466 123 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 FGF9P31371 208 aaPredicted RBP16.07■□□□□ 0.16
CLN3-225ENST00000566824 BMXP51813 675 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 CLDN12P56749 244 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 EDDM3BP56851 147 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 RPL31P62899 125 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms