RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 OR5D18Q8NGL1 313 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 OR5D14Q8NGL3 314 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 RPS4Y2Q8TD47 263 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 CDCA4Q9BXL8 241 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 INPP5EQ9NRR6 644 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 FAM118AQ9NWS6 357 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 ERVK13-1Q9NX77 482 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 SESN1Q9Y6P5 492 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 IGKV1-12A0A0C4DH73 117 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 TSPAN15O95858 294 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 IGKV1D-12P01611 117 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 ERP29P30040 261 aaKnown RBP18.16■□□□□ 0.5
CLN3-215ENST00000565236 OR3A1P47881 315 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 RAB40BQ12829 278 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 MRPL28Q13084 256 aaKnown RBP18.16■□□□□ 0.5
CLN3-215ENST00000565236 RNF144BQ7Z419 303 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 SERPINA12Q8IW75 414 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 SAXO1Q8IYX7 474 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 PQLC1Q8N2U9 271 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 FAM110DQ8TAY7 271 aaPredicted RBP18.16■□□□□ 0.5
CLN3-215ENST00000565236 COMMD4Q9H0A8 199 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 RHOFQ9HBH0 211 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 PITPNC1Q9UKF7 332 aa18.16■□□□□ 0.5
CLN3-215ENST00000565236 UBE2J1Q9Y385 318 aaPredicted RBP18.16■□□□□ 0.5
CLN3-215ENST00000565236 RPL36Q9Y3U8 105 aaKnown RBP18.16■□□□□ 0.5
CLN3-215ENST00000565236 TET2Q6N021 2002 aaPredicted RBP18.15■□□□□ 0.5
CLN3-215ENST00000565236 FUOMA2VDF0 154 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 TMEM212A6NML5 194 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 EBAG9O00559 213 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 KDM4BO94953 1096 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 OR2H2O95918 312 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 HCKP08631 526 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 CSF1P09603 554 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 GBX2P52951 348 aaPredicted RBP18.15■□□□□ 0.5
CLN3-215ENST00000565236 P2RX3P56373 397 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 SCN1BQ07699 218 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 PDLIM3Q53GG5 364 aaPredicted RBP18.15■□□□□ 0.5
CLN3-215ENST00000565236 KLHL22Q53GT1 634 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 LDLRAD2Q5SZI1 272 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 OR5AK2Q8NH90 309 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 TMEM133Q9H2Q1 129 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 TCF19Q9Y242 345 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 HILPDAQ9Y5L2 63 aa18.15■□□□□ 0.5
CLN3-215ENST00000565236 TRGV10A0A0A0MS01 117 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 IGHV2-26A0A0B4J1V2 119 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 E9PI62 339 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 ZFPL1O95159 310 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 CCDC159P0C7I6 412 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 TMEM225BP0DP42 221 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 MINOS1Q5TGZ0 78 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 KLHDC1Q8N7A1 406 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 OR52I1Q8NGK6 324 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 NDNFQ8TB73 568 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 CLEC7AQ9BXN2 247 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 FOXJ3Q9UPW0 622 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 DHDHQ9UQ10 334 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 MINOS1-NBL1R4GNA1 71 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 KIAA2026Q5HYC2 2103 aa18.14■□□□□ 0.49
CLN3-215ENST00000565236 A6NDX4 124 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 SULT1B1O43704 296 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 ALX3O95076 343 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 VSIG10L2P0DP72 767 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 ZNF44P15621 663 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 LMO1P25800 156 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 KISS1Q15726 138 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 CCBE1Q6UXH8 406 aaPredicted RBP18.13■□□□□ 0.49
CLN3-215ENST00000565236 TMEM219Q86XT9 240 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 PARP16Q8N5Y8 322 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 C11orf44Q8N8P7 122 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 TSEN15Q8WW01 171 aaKnown RBP18.13■□□□□ 0.49
CLN3-215ENST00000565236 PDCD1LG2Q9BQ51 273 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 ZNF649Q9BS31 505 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 GAL3ST2Q9H3Q3 398 aa18.13■□□□□ 0.49
CLN3-215ENST00000565236 MRPS18AQ9NVS2 196 aaKnown RBP18.13■□□□□ 0.49
CLN3-215ENST00000565236 A0A0G2JK05 382 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 MEGF11A6BM72 1044 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 H3BUI4 141 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 F2RL2O00254 374 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 BAG2O95816 211 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 DYNLT3P51808 116 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 SLC34A1Q06495 639 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 AESQ08117 197 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 OR52W1Q6IF63 320 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 ZNF555Q8NEP9 628 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 HAVCR2Q8TDQ0 301 aa18.12■□□□□ 0.49
CLN3-215ENST00000565236 DEGS1O15121 323 aa18.11■□□□□ 0.49
CLN3-215ENST00000565236 MMP23AO75900 390 aa18.11■□□□□ 0.49
CLN3-215ENST00000565236 HTR1DP28221 377 aa18.11■□□□□ 0.49
CLN3-215ENST00000565236 GLIPR1P48060 266 aa18.11■□□□□ 0.49
CLN3-215ENST00000565236 ABHD12Q8N2K0 398 aa18.11■□□□□ 0.49
CLN3-215ENST00000565236 CHST4Q8NCG5 386 aa18.11■□□□□ 0.49
CLN3-215ENST00000565236 CORO2AQ92828 525 aa18.11■□□□□ 0.49
CLN3-215ENST00000565236 ZNF702PQ9H963 129 aa18.11■□□□□ 0.49
CLN3-215ENST00000565236 TAS2R3Q9NYW6 316 aa18.11■□□□□ 0.49
CLN3-215ENST00000565236 MAGEB3O15480 346 aa18.1■□□□□ 0.49
CLN3-215ENST00000565236 CDK2P24941 298 aa18.1■□□□□ 0.49
CLN3-215ENST00000565236 ZP1P60852 638 aa18.1■□□□□ 0.49
CLN3-215ENST00000565236 PRAMEF5Q5TYX0 476 aa18.1■□□□□ 0.49
CLN3-215ENST00000565236 ZNF691Q5VV52 312 aa18.1■□□□□ 0.49
CLN3-215ENST00000565236 LPCAT4Q643R3 524 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms