RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ATP6V1E1P36543 226 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 POLR2IP36954 125 aaKnown RBP13.45□□□□□ -0.26
CLN3-211ENST00000564091 MTCP1P56278 107 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 KRTAP10-11P60412 298 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 BDH1Q02338 343 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 TP53I3Q53FA7 332 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 VAX1Q5SQQ9 334 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 C16orf82Q7Z2V1 217 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 CCDC54Q8NEL0 328 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 DNAAF1Q8NEP3 725 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 RNF166Q96A37 237 aaPredicted RBP13.45□□□□□ -0.26
CLN3-211ENST00000564091 RFT1Q96AA3 541 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 SLC7A6OSQ96CW6 309 aaPredicted RBP13.45□□□□□ -0.26
CLN3-211ENST00000564091 AKR1E2Q96JD6 320 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 SLC25A33Q9BSK2 321 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 INPP5EQ9NRR6 644 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 GNG8Q9UK08 70 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 GSTK1Q9Y2Q3 226 aa13.45□□□□□ -0.26
CLN3-211ENST00000564091 TRGV10A0A0A0MS01 117 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 IGKV1-12A0A0C4DH73 117 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 WI2-2373I1.2A0A1W2PRP0 233 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 LEUTXA8MZ59 168 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 OR2H2O95918 312 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 IGKV1D-12P01611 117 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 AMY1AP04745 511 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 AMY2AP04746 511 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 ATF1P18846 271 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 GLIPR1P48060 266 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 ZNF85Q03923 595 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 AESQ08117 197 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 ATP6AP1Q15904 470 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 DEFB121Q5J5C9 76 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 KHDC1LQ5JSQ8 128 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 UTF1Q5T230 341 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 OR52W1Q6IF63 320 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 C11orf87Q6NUJ2 197 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 RNF144BQ7Z419 303 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 RTN4RL2Q86UN3 420 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 OR4X2Q8NGF9 303 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 ZNF596Q8TC21 504 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 PP6455Q8WZ26 134 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 FGGYQ96C11 551 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 C10orf35Q96D05 121 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 RBM14Q96PK6 669 aaKnown RBP13.44□□□□□ -0.26
CLN3-211ENST00000564091 ZNF286AQ9HBT8 521 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 HMG20AQ9NP66 347 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 ING3Q9NXR8 418 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 GLS2Q9UI32 602 aa13.44□□□□□ -0.26
CLN3-211ENST00000564091 OR2F2O95006 317 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 IGLV1-47P01700 117 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 UBCP0CG48 685 aaKnown RBP13.43□□□□□ -0.26
CLN3-211ENST00000564091 CDC42P60953 191 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 SLC35A2P78381 396 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 SCN1BQ07699 218 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 PDZK1IP1Q13113 114 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 KPNB1Q14974 876 aaKnown RBP13.43□□□□□ -0.26
CLN3-211ENST00000564091 C9orf152Q5JTZ5 239 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 SPIN3Q5JUX0 258 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 HEPN1Q6WQI6 88 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 EME1Q96AY2 570 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 RCC1LQ96I51 464 aaKnown RBP13.43□□□□□ -0.26
CLN3-211ENST00000564091 SPACA5Q96QH8 159 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 CIB1Q99828 191 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 GAL3ST2Q9H3Q3 398 aa13.43□□□□□ -0.26
CLN3-211ENST00000564091 EXOSC4Q9NPD3 245 aaKnown RBP13.43□□□□□ -0.26
CLN3-211ENST00000564091 SH2D1BO14796 132 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 PRKACBP22694 351 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 HOXD3P31249 432 aaPredicted RBP13.42□□□□□ -0.26
CLN3-211ENST00000564091 ISL1P61371 349 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 TPTE2P1Q5T6R2 138 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 LHFPL2Q6ZUX7 228 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 UTS2BQ765I0 119 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 FAM220AQ7Z4H9 259 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 AMIGO2Q86SJ2 522 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 ZDHHC13Q8IUH4 622 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 OR5D18Q8NGL1 313 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 OR2G2Q8NGZ5 317 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 CORO2AQ92828 525 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 GABARAPL1Q9H0R8 117 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 TAS2R3Q9NYW6 316 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.42□□□□□ -0.26
CLN3-211ENST00000564091 HHLA2Q9UM44 414 aa13.42□□□□□ -0.26
CLN3-211ENST00000564091 ODAMA1E959 279 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 BUB1B-PAK6H3BSN5 160 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 TOR1AO14656 332 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 ZNF20P17024 532 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 OR3A4PP47883 348 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 ARHGDIBP52566 201 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 RBM39Q14498 530 aaKnown RBP13.41□□□□□ -0.26
CLN3-211ENST00000564091 HLA-DRB5Q30154 266 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 TMEM244Q5VVB8 128 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 OR10AC1Q8NH08 325 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 OPALINQ96PE5 141 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 RIBC2Q9H4K1 309 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 FRRS1LQ9P0K9 344 aa13.41□□□□□ -0.26
CLN3-211ENST00000564091 TENM3Q9P273 2699 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 FUOMA2VDF0 154 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 LY6LH3BQJ8 138 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 KDM4BO94953 1096 aa13.4□□□□□ -0.26
CLN3-211ENST00000564091 OCM2P0CE71 109 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms