RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ATP23Q9Y6H3 246 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 PTPRZ1P23471 2315 aaPredicted RBP6.44□□□□□ -1.38
VPS39-204ENST00000561818 ARHGAP21Q5T5U3 1957 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 WDFY4Q6ZS81 3184 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 MYO15AQ9UKN7 3530 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 IGKV1-27A0A075B6S5 117 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 IGHV2OR16-5A0A0B4J2B6 119 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 MEIS3P1A6NDR6 274 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 RFPL4AA6NLU0 287 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 RNF212BA8MTL3 300 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 TRDCB7Z8K6 153 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 C3orf80F5H4A9 247 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 RFPL4AL1F8VTS6 287 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 SPRY1O43609 319 aaPredicted RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 ANGPTL7O43827 346 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 SCAF4O95104 1147 aaKnown RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 NXPH2O95156 264 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 SFT2D2O95562 160 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 PTBP3O95758 552 aaKnown RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 NAPSAO96009 420 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 IGHV3-13P01766 116 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 PMP2P02689 132 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 CSN2P05814 226 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 WNT2P09544 360 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 CECR9P0C854 216 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 SLC25A4P12235 298 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 PTHLHP12272 177 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 ZNF250P15622 560 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 PRKACAP17612 351 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 NFYAP23511 347 aaPredicted RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 CD200P41217 278 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 TDGF1P3P51864 188 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 KLF3P57682 345 aaPredicted RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 RND3P61587 244 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 NAAAQ02083 359 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 SMCO1Q147U7 214 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 NKPD1Q17RQ9 610 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 TMEM255AQ5JRV8 349 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 C6orf183Q5T699 404 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 OR2T2Q6IF00 324 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 EIF5AL1Q6IS14 154 aaKnown RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 CRIP3Q6Q6R5 217 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 C6orf201Q7Z4U5 140 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 C1QL2Q7Z5L3 287 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 GLCCI1Q86VQ1 547 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 MUC20Q8N307 709 aaPredicted RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 TCTEX1D1Q8N7M0 179 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 LRTM2Q8N967 370 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 ZNF565Q8N9K5 539 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 WDR31Q8NA23 367 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 INO80EQ8NBZ0 244 aaPredicted RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 ZBTB34Q8NCN2 500 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 OR4S1Q8NGB4 309 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 OR4D10Q8NGI6 311 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 OR10K1Q8NGX5 313 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 LRRC20Q8TCA0 184 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 EXTL1Q92935 676 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 DVL3Q92997 716 aaPredicted RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 IL22RA2Q969J5 263 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 MOB3AQ96BX8 217 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 PHYHIPLQ96FC7 376 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 NRIP2Q9BQI9 281 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 TMEM246Q9BRR3 403 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 OR2J1Q9GZK6 312 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 FN3KRPQ9HA64 309 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 CA10Q9NS85 328 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 KCNIP1Q9NZI2 227 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 MYEF2Q9P2K5 600 aaKnown RBP6.43□□□□□ -1.38
VPS39-204ENST00000561818 FLVCR2Q9UPI3 526 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 MAB21L2Q9Y586 359 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 FAM215AQ9Y5M1 114 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 A0A0C4DFX4 3053 aa6.43□□□□□ -1.38
VPS39-204ENST00000561818 IGKV1-12A0A0C4DH73 117 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 TEX13DA0A0J9YY54 714 aaPredicted RBP6.42□□□□□ -1.38
VPS39-204ENST00000561818 C5orf63A6NC05 138 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 L7N2F9 121 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 GOSR2O14653 212 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 RP2O75695 350 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 LY86O95711 162 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 PLATP00750 562 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 NGFP01138 241 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 IGKV1D-12P01611 117 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 HPXP02790 462 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 RLN2P04090 185 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 SFTPBP07988 381 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 ADH4P08319 380 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 ZNF728P0DKX0 622 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 GLI4P10075 376 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 ZNF44P15621 663 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 CA6P23280 308 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 LMO1P25800 156 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 GATA4P43694 442 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 ERVK11-1P61568 191 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 SORDQ00796 357 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 PSG7Q13046 419 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 HLXQ14774 488 aaPredicted RBP6.42□□□□□ -1.38
VPS39-204ENST00000561818 PIGYQ3MUY2 71 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 OR52W1Q6IF63 320 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 FAAP20Q6NZ36 180 aa6.42□□□□□ -1.38
VPS39-204ENST00000561818 NCCRP1Q6ZVX7 275 aaPredicted RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms