RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 OR4X2Q8NGF9 303 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 EMG1Q92979 244 aaKnown RBP13.05□□□□□ -0.32
CLN3-208ENST00000561505 CREB3L1Q96BA8 519 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 BORCS8Q96FH0 119 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 WWC2-AS2Q96NR7 200 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 PRRG3Q9BZD7 231 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 CHST6Q9GZX3 395 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 COMMD4Q9H0A8 199 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 HMG20AQ9NP66 347 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 RBFOX1Q9NWB1 397 aaKnown RBP13.05□□□□□ -0.32
CLN3-208ENST00000561505 METTL15A6NJ78 407 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 BUB1B-PAK6H3BSN5 160 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 KRT8P05787 483 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 OR2T7P0C7T2 308 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 CGB3P0DN86 165 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 CGB7P0DN87 165 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 GABRR1P24046 479 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 CD24P25063 80 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 SLC6A1P30531 599 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 GDNFP39905 211 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 RBP2P50120 134 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 GYS2P54840 703 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 HLA-DRB5Q30154 266 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 GID4Q8IVV7 300 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 PRSS35Q8N3Z0 413 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 GAL3ST2Q9H3Q3 398 aa13.04□□□□□ -0.32
CLN3-208ENST00000561505 H2AFY2Q9P0M6 372 aaPredicted RBP13.04□□□□□ -0.32
CLN3-208ENST00000561505 WARS2Q9UGM6 360 aaKnown RBP13.04□□□□□ -0.32
CLN3-208ENST00000561505 SERPINA3P01011 423 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 CDK2P24941 298 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 DUSP1P28562 367 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 THBS3P49746 956 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 ATP1B3P54709 279 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 DEFB121Q5J5C9 76 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 TPTE2P1Q5T6R2 138 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 YIPF7Q8N8F6 280 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 STMN2Q93045 179 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 THTPAQ9BU02 230 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 LINC00574Q9H8X3 128 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 PLEKHA1Q9HB21 404 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 RHOFQ9HBH0 211 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 ZNF286AQ9HBT8 521 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 PCDHGB5Q9Y5G0 923 aa13.03□□□□□ -0.32
CLN3-208ENST00000561505 TRGV10A0A0A0MS01 117 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 IGKV1-12A0A0C4DH73 117 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 A0A1W2PQL4 384 aaPredicted RBP13.02□□□□□ -0.33
CLN3-208ENST00000561505 FUOMA2VDF0 154 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 E9PQ18 207 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 M0R129 80 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 RPP14O95059 124 aaKnown RBP13.02□□□□□ -0.33
CLN3-208ENST00000561505 CLIC3O95833 236 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 OR2H2O95918 312 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 IGKV1D-12P01611 117 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 MT-ND2P03891 347 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 VSIG8P0DPA2 414 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 BCL3P20749 454 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 CEACAM3P40198 252 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 KIR3DL2P43630 455 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 ARHGDIBP52566 201 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 PDZK1IP1Q13113 114 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 C17orf58Q2M2W7 97 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 PRAMEF5Q5TYX0 476 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 KDM4DQ6B0I6 523 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 ADAT3Q96EY9 351 aaPredicted RBP13.02□□□□□ -0.33
CLN3-208ENST00000561505 P2RX4Q99571 388 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 MCRIP2Q9BUT9 160 aaKnown RBP13.02□□□□□ -0.33
CLN3-208ENST00000561505 NCOR1P1Q9H4R4 102 aa13.02□□□□□ -0.33
CLN3-208ENST00000561505 LOC107986453A0A1B0GWG9 222 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 SH2D1BO14796 132 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 MITFO75030 526 aaPredicted RBP13.01□□□□□ -0.33
CLN3-208ENST00000561505 KDM4BO94953 1096 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 ISG15P05161 165 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 UBCP0CG48 685 aaKnown RBP13.01□□□□□ -0.33
CLN3-208ENST00000561505 PRKACBP22694 351 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 HTR1FP30939 366 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 HOXD3P31249 432 aaPredicted RBP13.01□□□□□ -0.33
CLN3-208ENST00000561505 GLIPR1P48060 266 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 TMED1Q13445 227 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 DCTN2Q13561 401 aaKnown RBP13.01□□□□□ -0.33
CLN3-208ENST00000561505 FLOT2Q14254 428 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 CCDC144NLQ6NUI1 221 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 Q6P435 159 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 FDX2Q6P4F2 183 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 COQ2Q96H96 371 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 MBOAT4Q96T53 435 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 ZFP57Q9NU63 452 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 GLS2Q9UI32 602 aa13.01□□□□□ -0.33
CLN3-208ENST00000561505 ODAMA1E959 279 aa13□□□□□ -0.33
CLN3-208ENST00000561505 INMTO95050 263 aa13□□□□□ -0.33
CLN3-208ENST00000561505 FAM107AO95990 144 aa13□□□□□ -0.33
CLN3-208ENST00000561505 PRKACAP17612 351 aa13□□□□□ -0.33
CLN3-208ENST00000561505 ATF1P18846 271 aa13□□□□□ -0.33
CLN3-208ENST00000561505 MYCNOSP40205 109 aa13□□□□□ -0.33
CLN3-208ENST00000561505 MTCP1P56278 107 aa13□□□□□ -0.33
CLN3-208ENST00000561505 RPL23AP62750 156 aaKnown RBP13□□□□□ -0.33
CLN3-208ENST00000561505 ODF4Q2M2E3 257 aa13□□□□□ -0.33
CLN3-208ENST00000561505 UTF1Q5T230 341 aa13□□□□□ -0.33
CLN3-208ENST00000561505 LHFPL2Q6ZUX7 228 aa13□□□□□ -0.33
CLN3-208ENST00000561505 TRAPPC6BQ86SZ2 158 aa13□□□□□ -0.33
CLN3-208ENST00000561505 SPATA24Q86W54 205 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms