RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 MADCAM1Q13477 382 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 ZNF146Q15072 292 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 MPPED2Q15777 294 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 KCNJ8Q15842 424 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 ZNF79Q15937 498 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 MICBQ29980 383 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 MST1LQ2TV78 715 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 HFEQ30201 348 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 PIGYQ3MUY2 71 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 ZNF260Q3ZCT1 412 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 NKAPLQ5M9Q1 402 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 ATAD3CQ5T2N8 411 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 ZNF57Q68EA5 555 aaPredicted RBP5.43□□□□□ -1.54
SPG11-221ENST00000560299 MZT2BQ6NZ67 158 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 ACP7Q6ZNF0 438 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 ZNF826PQ6ZT77 177 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 PEG10Q86TG7 708 aaKnown RBP5.43□□□□□ -1.54
SPG11-221ENST00000560299 WDR86Q86TI4 376 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 DTX2Q86UW9 622 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 C11orf53Q8IXP5 236 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 LRRC75A-AS1Q8N1F1 130 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 TOMM5Q8N4H5 51 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 DTX3Q8N9I9 347 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 PPP1R35Q8TAP8 253 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 SETD6Q8TBK2 473 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 SMIM4Q8WVI0 70 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 DEDD2Q8WXF8 326 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 GTF3AQ92664 365 aaKnown RBP5.43□□□□□ -1.54
SPG11-221ENST00000560299 COX4I2Q96KJ9 171 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 ABHD1Q96SE0 405 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 NICN1Q9BSH3 213 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 RIMS4Q9H426 269 aaPredicted RBP5.43□□□□□ -1.54
SPG11-221ENST00000560299 AUNIPQ9H7T9 357 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 PLEKHF2Q9H8W4 249 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 UBTD1Q9HAC8 227 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 SEBOXQ9HB31 216 aaPredicted RBP5.43□□□□□ -1.54
SPG11-221ENST00000560299 GCM1Q9NP62 436 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 IFT46Q9NQC8 304 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.43□□□□□ -1.54
SPG11-221ENST00000560299 DLL4Q9NR61 685 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 RBFOX1Q9NWB1 397 aaKnown RBP5.43□□□□□ -1.54
SPG11-221ENST00000560299 LAMP3Q9UQV4 416 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 CACNA1DQ01668 2161 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 ARFGEF3Q5TH69 2177 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 CHD3Q12873 2000 aaKnown RBP5.43□□□□□ -1.54
SPG11-221ENST00000560299 DYSFO75923 2080 aa5.43□□□□□ -1.54
SPG11-221ENST00000560299 TRAV38-1A0A0B4J264 116 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 IGHV1-69-2A0A0G2JMI3 117 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 TMEM235A6NFC5 223 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 POM121CA8CG34 1229 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 H7C417 338 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 CSF1P09603 554 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 CSF3P09919 207 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 DANCRP0C864 163 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 IL7P13232 177 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 MUC1P15941 1255 aaPredicted RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 CHATP28329 748 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 RCVRNP35243 200 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 MDH2P40926 338 aaKnown RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 KCNJ3P48549 501 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 SNU13P55769 128 aaKnown RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 TMEM50BP56557 158 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 GMFBP60983 142 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 MRPS11P82912 194 aaKnown RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 MOGAT2Q3SYC2 334 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 PAN3Q58A45 887 aaKnown RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 PRSS57Q6UWY2 283 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 SPNS3Q6ZMD2 512 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 BATF2Q8N1L9 274 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 BOLLQ8N9W6 283 aaKnown RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 OR52I2Q8NH67 350 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 NEK7Q8TDX7 302 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 CCL17Q92583 94 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 ARHGAP5-AS1Q96IT6 56 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 LURAP1Q96LR2 239 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 ZNF488Q96MN9 340 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 FOXC2Q99958 501 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 CMSS1Q9BQ75 279 aaKnown RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 C7orf50Q9BRJ6 194 aaKnown RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 TRAF4Q9BUZ4 470 aaPredicted RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 PECRQ9BY49 303 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 CLEC4MQ9H2X3 399 aaPredicted RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 IFT22Q9H7X7 185 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 HES4Q9HCC6 221 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 TMEM106BQ9NUM4 274 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 NLKQ9UBE8 527 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 MTFP1Q9UDX5 166 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 OR14J1Q9UGF5 321 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 ZNF107Q9UII5 783 aaPredicted RBP5.42□□□□□ -1.54
SPG11-221ENST00000560299 ITPR3Q14573 2671 aa5.42□□□□□ -1.54
SPG11-221ENST00000560299 DSCAMO60469 2012 aa5.41□□□□□ -1.54
SPG11-221ENST00000560299 PPIAL4EA0A075B759 164 aa5.41□□□□□ -1.54
SPG11-221ENST00000560299 A0A0A6YYD4 124 aa5.41□□□□□ -1.54
SPG11-221ENST00000560299 A0A1W2PQ09 198 aa5.41□□□□□ -1.54
SPG11-221ENST00000560299 UBE2QL1A1L167 161 aa5.41□□□□□ -1.54
SPG11-221ENST00000560299 FUOMA2VDF0 154 aa5.41□□□□□ -1.54
SPG11-221ENST00000560299 NAP1L6A6NFF2 107 aa5.41□□□□□ -1.54
SPG11-221ENST00000560299 OOEPA6NGQ2 149 aa5.41□□□□□ -1.54
SPG11-221ENST00000560299 NKX6-3A6NJ46 265 aa5.41□□□□□ -1.54
SPG11-221ENST00000560299 RFPL4AA6NLU0 287 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms