RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 BDKRB2P30411 391 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 CA7P43166 264 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 MAGEB1P43366 347 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 KIR3DL2P43630 455 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 CNN1P51911 297 aaKnown RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 SELENOVP59797 346 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 RPS11P62280 158 aaKnown RBP eCLIP4.37□□□□□ -1.71
LDLR-209ENST00000558528 PITPNAQ00169 270 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 MXD1Q05195 221 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 IL24Q13007 206 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 PLA2G7Q13093 441 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 HNRNPA0Q13151 305 aaKnown RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 AGAP6Q5VW22 663 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 ZNF774Q6NX45 483 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 XKRXQ6PP77 449 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 BAIAP2L2Q6UXY1 529 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SPNS3Q6ZMD2 512 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 STAC2Q6ZMT1 411 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 COLCA1Q6ZS62 124 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 UTS2BQ765I0 119 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 BHLHA15Q7RTS1 189 aaPredicted RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 WDFY1Q8IWB7 410 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 C1orf87Q8N0U7 546 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 GCNT2Q8N0V5 402 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 GABRG1Q8N1C3 465 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 RFLNBQ8N5W9 214 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 PNLDC1Q8NA58 520 aaKnown RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 SLC30A7Q8NEW0 376 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 OR8B12Q8NGG6 310 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 OR6Q1Q8NGQ2 317 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 ZNF671Q8TAW3 534 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 OSR1Q8TAX0 266 aaPredicted RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 NDNFQ8TB73 568 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 CCDC107Q8WV48 283 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SSMEM1Q8WWF3 244 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 PIGTQ969N2 578 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 PHF21AQ96BD5 680 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 GRAMD2BQ96HH9 432 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 RITA1Q96K30 269 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SORCS2Q96PQ0 1159 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 S100A13Q99584 98 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 ASCL2Q99929 193 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 UQCC2Q9BRT2 126 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SSBP3Q9BWW4 388 aaPredicted RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 BCL2L14Q9BZR8 327 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SLIRPQ9GZT3 109 aaKnown RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 C6orf62Q9GZU0 229 aaPredicted RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 SLC22A4Q9H015 551 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 TPK1Q9H3S4 243 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SEBOXQ9HB31 216 aaPredicted RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 PLGRKTQ9HBL7 147 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 GPR84Q9NQS5 396 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 B3GNT2Q9NY97 397 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SPATA2Q9UM82 520 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SLC7A11Q9UPY5 501 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 MEMO1Q9Y316 297 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 MAB21L2Q9Y586 359 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 FAM215AQ9Y5M1 114 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 ETV7Q9Y603 341 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 V9GYS6 101 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 A0A087X0K7 114 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 A0A0A6YYH2 397 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 LOC107986453A0A1B0GWG9 222 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 C5orf49A4QMS7 147 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 GGT3PA6NGU5 568 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 A6NJ64 397 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 OR5H1A6NKK0 313 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 IFITM5A6NNB3 132 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 ANKRD30BLA7E2S9 258 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 C15orf62A8K5M9 175 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 PRR32B1ATL7 298 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 PRSS44E7EML9 344 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 AIPO00170 330 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 P2RY10O00398 339 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 CCL21O00585 134 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 ZNF780AO75290 641 aaPredicted RBP4.36□□□□□ -1.71
LDLR-209ENST00000558528 LYZL6O75951 148 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 TOXO94900 526 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 IGKV3-15P01624 115 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 IGLV3-1P01715 115 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 HLA-HP01893 362 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 CRYAAP02489 173 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 APOA1P02647 267 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 IGFBP3P17936 291 aaPredicted RBP4.36□□□□□ -1.71
LDLR-209ENST00000558528 CCNOP22674 350 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 MPZP25189 248 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 CHRNB4P30926 498 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 ETV6P41212 452 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 RPS23P62266 143 aaKnown RBP4.36□□□□□ -1.71
LDLR-209ENST00000558528 MRPS10P82664 201 aaKnown RBP4.36□□□□□ -1.71
LDLR-209ENST00000558528 MFGE8Q08431 387 aaPredicted RBP4.36□□□□□ -1.71
LDLR-209ENST00000558528 GPR176Q14439 515 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 ARL6IP1Q15041 203 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 TMEM41BQ5BJD5 291 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 CLVS2Q5SYC1 327 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 IDNKQ5T6J7 187 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 C9orf135Q5VTT2 229 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 SFXN4Q6P4A7 337 aa4.36□□□□□ -1.71
LDLR-209ENST00000558528 MRPL21Q7Z2W9 205 aaKnown RBP4.36□□□□□ -1.71
LDLR-209ENST00000558528 LRRC28Q86X40 367 aaPredicted RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms